/** Return the lexical form of a literal node, error for other node types */
protected String getString(Node n, RuleContext context) {
if (n.isLiteral()) {
return n.getLiteralLexicalForm();
} else {
throw new BuiltinException(this, context, getName() + " takes only literal arguments");
}
}
@Test
public void identicallyNamedNodesAreNotSameObject() {
Node uriA = Node.createURI("http://slashdot.org/");
Node uriB = Node.createURI("http://slashdot.org/");
assertTrue(uriA.equals(uriB));
assertTrue(uriA != uriB);
}
/** @author Rowland Watkins ([email protected]) */ public class SWP_V { /** The namespace of the vocabulary as a string */ public static final String NS = "http://www.w3.org/2004/03/trix/swp-verification"; /** * The namespace of the vocabulary as a string * * @see #NS */ public static String getURI() { return NS; } /** The namespace of the vocabulary as a resource */ public static final Node NAMESPACE = Node.createURI(NS); public static final Node default_graph = Node.createURI("http://www.w3.org/2004/03/trix/swp-verification/verifiedSignatures"); /** The object contains the status value of a signature for the subject graph. */ public static final Node successful = Node.createURI("http://www.w3.org/2004/03/trix/swp-verification/successful"); public static final Node notSuccessful = Node.createURI("http://www.w3.org/2004/03/trix/swp-verification/notSuccessful"); }
/*
* See http://www.w3.org/TR/rdf-sparql-query paragraph 11.4.4
*
* "(STR) Returns the lexical form of a literal; returns the codepoint representation of an IRI."
*
* @see http://www.w3.org/TR/rdf-sparql-query
*/
private void convertStr(E_Str expr) {
logger.debug("convertStr " + expr.toString());
expr.getArg().visit(this);
Expression arg = expression.pop();
if (arg instanceof AttributeExprEx) {
// make a new AttributeExprEx with changed NodeMaker, which returns plain literal
// TODO this seems to work, but needs more testing.
AttributeExprEx attribute = (AttributeExprEx) arg;
TypedNodeMaker nodeMaker = (TypedNodeMaker) attribute.getNodeMaker();
TypedNodeMaker newNodeMaker =
new TypedNodeMaker(
TypedNodeMaker.PLAIN_LITERAL, nodeMaker.valueMaker(), nodeMaker.isUnique());
logger.debug("changing nodemaker " + nodeMaker + " to " + newNodeMaker);
expression.push(
new AttributeExprEx((Attribute) attribute.attributes().iterator().next(), newNodeMaker));
} else if (arg instanceof ConstantEx) {
ConstantEx constant = (ConstantEx) arg;
Node node = constant.getNode();
String lexicalForm = node.getLiteral().getLexicalForm();
node = Node.createLiteral(lexicalForm);
ConstantEx constantEx = new ConstantEx(NodeValue.makeNode(node).asString(), node);
logger.debug("pushing " + constantEx);
expression.push(constantEx);
} else {
conversionFailed(expr);
}
}
@Test
public void theEconomizerDoesntSquashOtherNodes() {
Economizer<Node> e = new CacheEconomizer<Node>();
Node uriA = e.economize(Node.createURI("http://slashdot.org/1"));
Node uriB = e.economize(Node.createURI("http://slashdot.org/2"));
assertTrue(uriA != uriB);
}
@Test
public void theEconomizerChangesThat() {
Economizer<Node> e = new CacheEconomizer<Node>();
Node uriA = e.economize(Node.createURI("http://slashdot.org/"));
Node uriB = e.economize(Node.createURI("http://slashdot.org/"));
assertTrue(uriA == uriB);
}
@Override
public Triple createValue() {
System.out.println("selfdebug: create Triple value");
Triple returnable = new Triple(Node.createAnon(), Node.createAnon(), Node.createAnon());
System.out.println("selfdebug: Triple created");
return returnable;
}
@Override
public void newIndividual(String individualURI, String individualTypeURI, String graphURI)
throws RDFServiceException {
StringBuffer containsQuery = new StringBuffer("ASK { \n");
if (graphURI != null) {
containsQuery.append(" GRAPH <" + graphURI + "> { ");
}
containsQuery.append("<");
containsQuery.append(individualURI);
containsQuery.append("> ");
containsQuery.append("?p ?o");
if (graphURI != null) {
containsQuery.append(" } \n");
}
containsQuery.append("\n}");
if (sparqlAskQuery(containsQuery.toString())) {
throw new RDFServiceException("individual already exists");
} else {
Triple triple =
new Triple(
Node.createURI(individualURI), RDF.type.asNode(), Node.createURI(individualTypeURI));
// addTriple(triple, graphURI);
ChangeSet cs = this.manufactureChangeSet();
cs.addAddition(
new ByteArrayInputStream(sparqlTriple(triple).getBytes()),
ModelSerializationFormat.N3,
graphURI);
changeSetUpdate(cs);
}
}
protected static String sparqlNodeUpdate(Node node, String varName) {
if (node.isBlank()) {
return "_:" + node.getBlankNodeLabel().replaceAll("\\W", "");
} else {
return sparqlNode(node, varName);
}
}
private void setVars(Map<Var, Node> values, String fieldName) {
if (values.isEmpty()) {
return;
}
try {
Field f = Query.class.getDeclaredField(fieldName);
f.setAccessible(true);
List<String> orig = (List<String>) f.get(query);
List<String> lst = null;
if (orig != null) {
lst = new ArrayList<String>();
for (String s : orig) {
Node n = null;
if (s.startsWith("?")) {
Var v = Var.alloc(s.substring(1));
n = values.get(v);
}
lst.add(n == null ? s : n.toString());
}
f.set(query, lst);
}
} catch (NoSuchFieldException e) {
throw new IllegalStateException(e.getMessage(), e);
} catch (SecurityException e) {
throw new IllegalStateException(e.getMessage(), e);
} catch (IllegalAccessException e) {
throw new IllegalStateException(e.getMessage(), e);
}
}
private Object maxOfList(Node lst, RuleContext context) {
java.util.List<Node> l = Util.convertList(lst, context);
Number max = null;
XSDDateTime maxDate = null;
for (int i = 0; l != null && i < l.size(); i++) {
Node elt = (Node) l.get(i);
if (elt != null && elt.isLiteral()) {
Object v1 = elt.getLiteralValue();
if (v1 instanceof Number) {
if (max == null || max.doubleValue() < ((Number) v1).doubleValue()) {
max = (Number) v1;
}
} else if (v1 instanceof XSDDateTime) {
if (maxDate == null || maxDate.compareTo((XSDDateTime) v1) < 0) {
maxDate = (XSDDateTime) v1;
}
} else {
throw new BuiltinException(
this, context, "Element of list input to max not a number: " + v1.toString());
}
} else {
throw new BuiltinException(
this, context, "Element of list input to max not a Literal: " + elt.toString());
}
}
if (maxDate != null) {
return maxDate;
}
return max;
}
@Override
public RuleWrappedValueFunction<? extends BaseValueFunction> apply(RIFExternalExpr in) {
Node opNode = in.getExpr().getCommand().getOp().getNode();
throw new UnsupportedOperationException(
String.format(
"Cannot use the filtering predicate %s to supply a value.",
opNode.isLiteral() ? opNode.getLiteralValue().toString() : opNode.getURI()));
}
@Override
protected Node rename(Node uri) {
if (uri.getNameSpace().equals(replaceNS))
return Node.createURI(namespace + uri.getLocalName());
if (uri.getURI().equals(replace))
return Node.createURI(namespace.substring(0, namespace.length() - 1));
return uri;
}
@Test
public void testNextBinding() throws Exception {
when(mockValue.getString()).thenReturn("x");
final Binding binding = testObj.nextBinding();
assertTrue(binding.contains(Var.alloc("a")));
final Node a = binding.get(Var.alloc("a"));
assertEquals("x", a.getLiteralLexicalForm());
}
public static String lang(Node node) {
if (!node.isLiteral())
NodeValue.raise(
new ExprTypeException("lang: Not a literal: " + FmtUtils.stringForNode(node)));
String s = node.getLiteralLanguage();
if (s == null) s = "";
return s;
}
private SWRLIndividualObject makeIndividalObject(final Node node) throws URISyntaxException {
if (node.isVariable()) {
final SWRLIndividualVariable var =
swrlFactory.createIndividualVariable(new URI(varNS + node.getName()));
vars.put(node.toString(), var);
return var;
}
final OWLIndividual ind = owlModel.createIndividual(null, new URI(node.getURI()));
return swrlFactory.wrapIndividual(ind);
}
public static String str(Node node) {
if (node.isLiteral()) return node.getLiteral().getLexicalForm();
if (node.isURI()) return node.getURI();
// if ( node.isBlank() ) return node.getBlankNodeId().getLabelString() ;
// if ( node.isBlank() ) return "" ;
if (node.isBlank()) NodeValue.raise(new ExprTypeException("Blank node: " + node));
NodeValue.raise(new ExprEvalException("Not a string: " + node));
return "[undef]";
}
public static Node iri(Node nv, String baseIRI) {
if (nv.isURI()) return nv;
if (nv.isBlank()) {
// Skolemization of blank nodes to IRIs : Don't ask, just don't ask.
String x = nv.getBlankNodeLabel();
return Node.createURI("_:" + x);
}
if (nv.isLiteral() && nv.getLiteralDatatype() == null && nv.getLiteralLanguage().equals("")) {
// Plain literal
IRI iri = null;
String iriStr = nv.getLiteralLexicalForm();
// Level of checking?
if (baseIRI != null) {
IRI base = iriFactory.create(baseIRI);
iri = base.create(iriStr);
} else iri = iriFactory.create(iriStr);
if (!iri.isAbsolute()) throw new ExprEvalException("Relative IRI string: " + iriStr);
if (warningsForIRIs && iri.hasViolation(false)) {
String msg = "unknown violation from IRI library";
Iterator<Violation> iter = iri.violations(false);
if (iter.hasNext()) {
Violation viol = iter.next();
msg = viol.getShortMessage();
}
Log.warn(NodeFunctions.class, "Bad IRI: " + msg + ": " + iri);
}
return Node.createURI(iri.toString());
}
throw new ExprEvalException("Can't make an IRI from " + nv);
}
private static boolean matchNode(Item node, Item item, Match details) {
if (isAny(item)) {
details.anyMatches++;
return true;
}
if (isAnyVar(item)) {
details.varMatches++;
return true;
}
if (node.isSymbol()) {
// TERM in the thing to be matched means something concrete will be there.
if (node.equals(TERM)) {
if (item.equals(TERM)) {
details.termMatches++;
return true;
}
// Does not match LITERAL, URI, BNODE and VAR/ANY were done above.
return false;
}
throw new ARQException("StatsMatcher: unexpected slot type: " + node);
}
if (!node.isNode()) return false;
Node n = node.getNode();
if (n.isConcrete()) {
if (item.isNode() && item.getNode().equals(n)) {
details.exactMatches++;
return true;
}
if (isAnyTerm(item)) {
details.termMatches++;
return true;
}
if (isAnyURI(item) && n.isURI()) {
details.termMatches++;
return true;
}
if (isAnyLiteral(item) && n.isLiteral()) {
details.termMatches++;
return true;
}
if (isAnyBNode(item) && n.isBlank()) {
details.termMatches++;
return true;
}
}
return false;
}
/**
* this nodeToElement is pretty much identical to that of
* graph.query.patternstagecompiler.compile.
*/
private Element nodeToElement(Node X, Mapping map) {
if (X.equals(Query.ANY)) return Element.ANY;
if (X.isVariable()) {
if (map.hasBound(X)) return new Bound(map.indexOf(X));
else {
freeVarCnt++;
return new Free(X);
}
}
return new Fixed(X);
}
// Replaced by getVarsMentioned
@Deprecated
public static Set<Node> getVariables(Iterable<Node> nodes) {
Set<Node> result = new HashSet<Node>();
for (Node node : nodes) {
if (node.isVariable()) {
result.add(node);
}
}
return result;
}
private SWRLDataObject makeDataObject(final Node node) throws URISyntaxException {
if (node.isVariable()) {
final SWRLDataVariable var =
swrlFactory.createDataVariable(new URI(varNS + node.getName()));
vars.put(node.toString(), var);
return var;
}
final OWLDataValue value =
new OWLDataValueImpl(new LiteralImpl(node, (EnhGraph) owlModel.getImplementation()));
return swrlFactory.wrapDataValue(value);
}
public static NodeValue strDatatype(NodeValue v1, NodeValue v2) {
if (!v1.isString()) throw new ExprEvalException("Not a string (arg 1): " + v1);
if (!v2.isIRI()) throw new ExprEvalException("Not an IRI (arg 2): " + v2);
String lex = v1.asString();
Node dt = v2.asNode();
// Check?
Node n = Node.createLiteral(lex, null, Node.getType(dt.getURI()));
return NodeValue.makeNode(n);
}
@Override
public void augmentBlock(
TripleCollector arg0, String annotationBodyVar, String annotationHeadVar) {
// This assumes subject indexing
arg0.addTriple(
Triple.create(Var.alloc(annotationBodyVar), TEXTMATCH, Node.createLiteral(searchTerm)));
}
/*
* See http://www.w3.org/TR/rdf-sparql-query paragraph 11.4.7
*
* "(DATATYPE) Returns the datatype IRI of typedLit; returns xsd:string if the parameter is a simple literal."
*
* @see http://www.w3.org/TR/rdf-sparql-query
*/
private void convertDataType(E_Datatype expr) {
logger.debug("convertDataType " + expr.toString());
expr.getArg().visit(this);
Expression arg = expression.pop();
if (arg instanceof AttributeExprEx) {
AttributeExprEx variable = (AttributeExprEx) arg;
NodeMaker nm = variable.getNodeMaker();
DetermineNodeType filter = new DetermineNodeType();
nm.describeSelf(filter);
if (!filter.isLimittedToLiterals()) {
// type error, return false?
logger.warn("type error: " + variable + " is not a literal, returning FALSE");
expression.push(Expression.FALSE);
return;
}
RDFDatatype datatype = filter.getDatatype();
logger.debug("datatype " + datatype);
Node node =
Node.createURI((datatype != null) ? datatype.getURI() : XSDDatatype.XSDstring.getURI());
ConstantEx constantEx = new ConstantEx(NodeValue.makeNode(node).asString(), node);
logger.debug("pushing " + constantEx);
expression.push(constantEx);
} else if (arg instanceof ConstantEx) {
ConstantEx constant = (ConstantEx) arg;
Node node = constant.getNode();
if (!node.isLiteral()) {
// type error, return false?
logger.warn("type error: " + node + " is not a literal, returning FALSE");
expression.push(Expression.FALSE);
return;
}
RDFDatatype datatype = node.getLiteralDatatype();
logger.debug("datatype " + datatype);
node =
Node.createURI((datatype != null) ? datatype.getURI() : XSDDatatype.XSDstring.getURI());
ConstantEx constantEx = new ConstantEx(NodeValue.makeNode(node).asString(), node);
logger.debug("pushing " + constantEx);
expression.push(constantEx);
} else {
conversionFailed(expr);
}
}
private Node walkTree(
Model model,
Dataset oldDataset,
Node node,
Node predicate,
Query query,
QuerySolution initialBinding,
Set<Node> reached) {
QuerySolutionMap localBinding = new QuerySolutionMap();
localBinding.addAll(initialBinding);
localBinding.add("arg1", model.asRDFNode(node));
Dataset dataset = new DatasetWithDifferentDefaultModel(model, oldDataset);
QueryExecution qexec = ARQFactory.get().createQueryExecution(query, dataset, localBinding);
ResultSet rs = qexec.execSelect();
try {
if (rs.hasNext()) {
List<String> resultVars = rs.getResultVars();
String varName = resultVars.get(0);
RDFNode resultNode = rs.next().get(varName);
if (resultNode != null) {
return resultNode.asNode();
}
}
} finally {
qexec.close();
}
// Recurse into parents
ExtendedIterator<Triple> it = createIterator(model.getGraph(), node, predicate);
try {
while (it.hasNext()) {
Node next = getNext(it.next());
if ((next.isBlank() || next.isURI()) && !reached.contains(next)) {
reached.add(next);
Node nextResult =
walkTree(model, oldDataset, next, predicate, query, initialBinding, reached);
if (nextResult != null) {
return nextResult;
}
}
}
} finally {
it.close();
}
return null;
}
public SPDXChecksum(Model spdxModel, Node checksumNode) throws InvalidSPDXAnalysisException {
this.model = spdxModel;
this.checksumNode = checksumNode;
if (checksumNode.isBlank()) {
checksumResource = model.createResource(checksumNode.getBlankNodeId());
} else if (checksumNode.isURI()) {
checksumResource = model.createResource(checksumNode.getURI());
} else {
throw (new InvalidSPDXAnalysisException("Checksum node can not be a literal"));
}
// Algorithm
Node p =
spdxModel
.getProperty(SpdxRdfConstants.SPDX_NAMESPACE, SpdxRdfConstants.PROP_CHECKSUM_ALGORITHM)
.asNode();
Triple m = Triple.createMatch(checksumNode, p, null);
ExtendedIterator<Triple> tripleIter = spdxModel.getGraph().find(m);
while (tripleIter.hasNext()) {
Triple t = tripleIter.next();
if (t.getObject().isLiteral()) {
// The following is for compatibility with rdf generated with older
// versions of the tool
this.algorithm = t.getObject().toString(false);
} else if (t.getObject().isURI()) {
this.algorithm = URI_TO_ALGORITHM.get(t.getObject().getURI());
if (this.algorithm == null) {
this.algorithm = "UNKNOWN";
}
} else {
throw (new InvalidSPDXAnalysisException(
"Invalid checksum algorithm - must be one of the defined algorithms supported by SPDX."));
}
}
// value
p =
spdxModel
.getProperty(SpdxRdfConstants.SPDX_NAMESPACE, SpdxRdfConstants.PROP_CHECKSUM_VALUE)
.asNode();
m = Triple.createMatch(checksumNode, p, null);
tripleIter = spdxModel.getGraph().find(m);
while (tripleIter.hasNext()) {
Triple t = tripleIter.next();
this.value = t.getObject().toString(false);
}
}
/** Convert a Node into an instance of the class */
public EnhNode wrap(Node n, EnhGraph eg) {
if (canWrap(n, eg)) {
return new Thing(n, eg);
} else {
log.warn("Cannot convert node " + n.toString() + " to Thing");
return null;
}
}
protected Object extractBinding(Map<String, Node> binds, int nodeIndex) {
Node node = this.nodes[nodeIndex];
if (node.isVariable()) {
Node boundNode = binds.get(this.nodes[nodeIndex].getName());
if (boundNode == null) {
throw new UnsupportedOperationException("Unbound variable");
}
node = boundNode;
}
if (node.isConcrete()) {
Node_Concrete lit = (Node_Concrete) node;
if (lit.isLiteral()) return lit.getLiteralValue();
else if (lit.isURI()) return lit.getURI();
else if (lit.isBlank()) return lit.getBlankNodeLabel();
}
throw new UnsupportedOperationException("Incorrect node type for comparison: " + node);
}
/** Encoding of a node so it can be reconstructed */
public static String serialize(Node n, String base, PrefixMap prefixMap) {
// See also Nodec.
// See also OutputLangUtils - merge and this is a buffering call.
if (n == null) return "<<null>>";
if (n.isBlank()) {
String str = n.getBlankNodeLabel();
// c.f. OutputLangUtils
if (onlySafeBNodeLabels) str = safeBNodeLabel(str);
return "_:" + str;
}
if (n.isLiteral()) return FmtUtils.stringForLiteral((Node_Literal) n, null);
if (n.isURI()) {
String uri = n.getURI();
return stringForURI(uri, base, prefixMap);
}
// Safe name?
if (n.isVariable()) return "?" + n.getName();
//
// if ( n.equals(Node.ANY) )
// return "ANY" ;
throw new TDBException("Failed to turn a node into a string: " + n);
// return null ;
}