/**
* Add an item to the list.
*
* @param pNewWidget the new display widget
*/
@SuppressWarnings("unchecked")
protected void addDisplayWidget(final W pNewWidget) {
final String itemId = getIdFromWidget(pNewWidget);
int beforeIdx = -1;
for (Widget w : iGuiList) {
CbGenericListItem<W> gli = (CbGenericListItem<W>) w;
if (itemId.compareToIgnoreCase(getIdFromWidget(gli.getDisplayWidget())) < 0) {
beforeIdx = gli.getRowIdx();
break;
}
}
CbGenericListItem<W> newRow =
new CbGenericListItem<W>(getSelectorCallback(), getMoreArrowCallback());
newRow.setDisplayWidget(pNewWidget);
if (beforeIdx < 0) {
newRow.setRowIdx(iGuiList.getWidgetCount());
iGuiList.add(newRow);
} else {
newRow.setRowIdx(beforeIdx);
iGuiList.insert(newRow, beforeIdx);
int i = 0;
for (Widget w : iGuiList) {
((CbGenericListItem<W>) w).setRowIdx(i++);
}
}
checkEmptyListHint();
}
public void setResourcePlayLink() {
Anchor resourceAnchor = new Anchor();
resourceAnchor.setHref(getResourceLink());
resourceAnchor.setStyleName("");
resourceAnchor.getElement().appendChild(resourceImageContainer.getElement());
resourceThumbContainer.insert(resourceAnchor, 0);
}
public void makeEditable(ClickHandler saveClickHandler, Labels labels) {
annotationPanel.setVisible(false);
CommentField commentField = new CommentField(annotation.getText(), labels, true);
commentField.addSaveClickHandler(saveClickHandler);
container.insert(commentField, container.getWidgetIndex(annotationPanel));
}
public void add(Widget w) {
if (w instanceof Hidden) {
formElements.insert(w, 0);
} else {
formElements.add(w);
}
}
/**
* Adds a widget to the front of the button panel.
*
* <p>
*
* @param w the widget to add
*/
public void addButtonToFront(Widget w) {
m_buttonPanel.insert(w, 0);
if (CmsCoreProvider.get().isIe7()) {
m_buttonPanel.getElement().getStyle().setWidth(m_buttonPanel.getWidgetCount() * 22, Unit.PX);
}
}
/**
* Internal method which is called when the user clicks on an editable title field.
*
* <p>
*/
protected void editTitle() {
m_title.setVisible(false);
final TextBox box = new TextBox();
box.setText(m_title.getText());
box.getElement().setAttribute("size", "45");
box.addStyleName(I_CmsInputLayoutBundle.INSTANCE.inputCss().labelInput());
box.addStyleName(I_CmsLayoutBundle.INSTANCE.listItemWidgetCss().titleInput());
final String originalTitle = m_title.getText();
// wrap the boolean flag in an array so we can change it from the event handlers
final boolean[] checked = new boolean[] {false};
box.addBlurHandler(
new BlurHandler() {
/**
* @see
* com.google.gwt.event.dom.client.BlurHandler#onBlur(com.google.gwt.event.dom.client.BlurEvent)
*/
public void onBlur(BlurEvent event) {
if (checked[0]) {
return;
}
onEditTitleTextBox(box);
checked[0] = true;
}
});
box.addKeyPressHandler(
new KeyPressHandler() {
/**
* @see
* com.google.gwt.event.dom.client.KeyPressHandler#onKeyPress(com.google.gwt.event.dom.client.KeyPressEvent)
*/
public void onKeyPress(KeyPressEvent event) {
if (checked[0]) {
return;
}
int keycode = event.getNativeEvent().getKeyCode();
if ((keycode == 10) || (keycode == 13)) {
onEditTitleTextBox(box);
checked[0] = true;
}
if (keycode == 27) {
box.setText(originalTitle);
onEditTitleTextBox(box);
checked[0] = true;
}
}
});
m_titleRow.insert(box, 1);
box.setFocus(true);
}
private void addFile() {
file = new FileUpload();
file.setHeight("22px");
file.setWidth("100%");
file.setName("file");
file.ensureDebugId("file-uploadFile-ChooseFile");
file.addChangeHandler(
new ChangeHandler() {
@Override
public void onChange(ChangeEvent event) {
delegate.onFileNameChanged();
}
});
uploadPanel.insert(file, 0);
}
/** Does the actual addition of {@link UserItem}s to the top of the list. */
private void addHead() {
List<UserItem> l = head;
if (l.size() > 0) {
head = new ArrayList<UserItem>();
headKeys = new HashSet<Key>();
int offsetHeight = flowPanel.getOffsetHeight();
for (int i = l.size() - 1; i >= 0; i--) {
UserItem e = l.get(i);
RowWidget row = createRow(e);
flowPanel.insert(row, 0);
rows.put(row.getKey(), row);
}
int deltaHeight = flowPanel.getOffsetHeight() - offsetHeight;
scrollPanel.setVerticalScrollPosition(scrollPanel.getVerticalScrollPosition() + deltaHeight);
rowsAdded();
NewDataEvent.fire(this, NewDataType.NEW_DATA_SHOWN);
}
}
/**
* Ensures the open close button for the additional info list is present.
*
* <p>
*/
protected void ensureOpenCloseAdditionalInfo() {
if (m_openClose == null) {
m_openClose =
new CmsPushButton(
I_CmsImageBundle.INSTANCE.style().triangleRight(),
I_CmsImageBundle.INSTANCE.style().triangleDown());
m_openClose.setButtonStyle(ButtonStyle.TRANSPARENT, null);
m_titleRow.insert(m_openClose, 0);
m_openClose.addClickHandler(
new ClickHandler() {
/**
* @see
* com.google.gwt.event.dom.client.ClickHandler#onClick(com.google.gwt.event.dom.client.ClickEvent)
*/
public void onClick(ClickEvent event) {
setAdditionalInfoVisible(
!getElement().getClassName().contains(CmsListItemWidget.OPENCLASS));
}
});
}
}
public void add(Widget w, int index) {
formElements.insert(w, Math.max(0, Math.min(index, formElements.getWidgetCount())));
}
@Override
public void insert(Widget w, int beforeIndex) {
w.getElement().getStyle().setDisplay(Display.BLOCK);
super.insert(w, beforeIndex);
}
private void makeBookMarks(FlowPanel flowPanel, TextArea textArea) {
// TextArea firstTextArea = (TextArea) flowPanel.getWidget(0);
// Check for data criteria section. This has Measure Details and the start of
// dataCriteriaSection.
// We need to break it up so that "Measure Details" and dataCriteriaSection are 2 different
// textareas.
String text = textArea.getText();
int dataCritIndex = text.indexOf("<dataCriteriaSection>");
if (dataCritIndex > -1) {
String measureDetailsText = text.substring(0, dataCritIndex);
String dataCritSection = text.substring(dataCritIndex);
textArea.setText(measureDetailsText);
textArea.setVisibleLines(getLineCount(measureDetailsText) + 3);
TextArea dataCritTextArea = new TextArea();
dataCritTextArea.setStyleName("textarea_noborder");
dataCritTextArea.setText(dataCritSection);
flowPanel.add(dataCritTextArea);
dataCritTextArea.setReadOnly(true);
dataCritTextArea.setWidth("100%");
dataCritTextArea.setHeight("100%");
dataCritTextArea.setVisibleLines(getLineCount(dataCritSection) + 3);
flowPanel.insert(dataCritTextArea, flowPanel.getWidgetIndex(textArea) + 1);
bookmarkMap.put("Data Criteria Section", dataCritTextArea);
} else {
// make sure the textarea does not have a style class of 'entry_background' and
// 'criteriaRef_background',
// find '<populationCriteriaSection>'.
int isEntryTextArea = textArea.getStyleName().indexOf("entry_background");
int isCritRefTextArea = textArea.getStyleName().indexOf("criteriaRef_background");
if (isEntryTextArea == -1 && isCritRefTextArea == -1) {
if (text.indexOf("<populationCriteriaSection>") > -1) {
int extensionIndex = text.indexOf("<id extension=\"");
if (extensionIndex > -1) {
int startExtensionIndex = extensionIndex + "<id extension=\"".length();
String extension =
text.substring(startExtensionIndex, text.indexOf("\"", startExtensionIndex));
System.out.println("Pop Crit Extension:" + extension);
bookmarkMap.put(extension, textArea);
}
}
}
}
// int textAreaCount = flowPanel.getWidgetCount();
// Go through rest of the textAreas (from index 2) and for the textAreas which do
// not have a style class of 'entry_background' and 'criteriaRef_background',
// find '<populationCriteriaSection>'.
// for(int i = 2;i < textAreaCount; i++){
// TextArea textArea = (TextArea) flowPanel.getWidget(i);
// int isEntryTextArea = textArea.getStyleName().indexOf("entry_background");
// int isCritRefTextArea = textArea.getStyleName().indexOf("criteriaRef_background");
//
// if (isEntryTextArea == -1 && isCritRefTextArea == -1){
// if(textArea.getText().indexOf("<populationCriteriaSection>") > -1){
// String popCritText = textArea.getText();
// int extensionIndex = popCritText.indexOf("<id extension=\"");
// if(extensionIndex > -1){
// int startExtensionIndex = extensionIndex + "<id extension=\"".length();
// String extension = popCritText.substring(startExtensionIndex,
// popCritText.indexOf("\"",startExtensionIndex));
// System.out.println("Pop Crit Extension:"+extension);
// bookmarkMap.put(extension, textArea);
// }
// }
// }
// }
}
public void initialise(final Result result) {
this.clear(); // if not cleared then updated panels are added under old ones
TextPanel information =
new TextPanel(
" Here you can download the information the Molecules Tab provides.\n"
+ "The format will be TSV which can easily be handled with most word processors.");
information.setStyleName("elv-InformationPanel-Download");
this.addNorth(information, 25);
// Creating ToggleButton for each possible category of molecules.
VerticalPanel requiredType = new VerticalPanel();
requiredType.add(new TextPanel("Please select the type of Molecules you are interested in:"));
// Allow immediate changes to Preview by adding ClickHandler to every CheckBox.
ClickHandler updateText =
new ClickHandler() {
@Override
public void onClick(ClickEvent clickEvent) {
textArea.setText(resultToText());
textArea.setStyleName("elv-PreviewPanel-Download");
}
};
// Checking for each category of molecules if they are present before adding Handler.
if (result.getChemicals().size() > 0) {
requiredType.add(chemTB);
chemTB.addClickHandler(updateText);
}
if (result.getProteins().size() > 0) {
requiredType.add(protTB);
protTB.addClickHandler(updateText);
}
if (result.getSequences().size() > 0) {
requiredType.add(sequTB);
sequTB.addClickHandler(updateText);
}
if (result.getOthers().size() > 0) {
requiredType.add(otheTB);
otheTB.addClickHandler(updateText);
}
requiredType.setStyleName("elv-SelectionPanels-Download");
// Creating ToggleButton for each available attribute of molecules and adding Handler.
VerticalPanel requiredFields = new VerticalPanel();
requiredFields.add(new TextPanel("Please select the fields you are interested in:"));
typeTB.addClickHandler(updateText);
requiredFields.add(typeTB);
identifierTB.addClickHandler(updateText);
requiredFields.add(identifierTB);
nameTB.addClickHandler(updateText);
requiredFields.add(nameTB);
requiredFields.setStyleName("elv-SelectionPanels-Download");
// Creating button for download.
// Browsers that fully support Blob/Download:
// Chrome, Chrome for Android, Firefox 20+, IE 10+, Opera 15+, Safari 6.1+
VerticalPanel buttonField = new VerticalPanel();
buttonField.add(startDownloadBtn);
startDownloadBtn.setStyleName("elv-Download-Button");
buttonField.setStyleName("elv-ButtonPanel-Download");
startDownloadBtn.setTitle(
"Depending on your browser you can either download your file by clicking on this button"
+ " or your will be redirected to a new tab in your browser where you can right click and"
+ " save the data.");
startDownloadBtn.addClickHandler(
new ClickHandler() {
@Override
public void onClick(ClickEvent event) {
if ((chemTB.getValue() || protTB.getValue() || sequTB.getValue() || otheTB.getValue())
&& (typeTB.getValue() || nameTB.getValue() || identifierTB.getValue())) {
alertDownload(textArea.getText());
} else {
DialogBoxFactory.alert(
"Molecules Download",
"You are trying to download an empty file.\n"
+ "Please select at least one type of molecules AND one field for the download.");
}
presenter.moleculeDownloadStarted();
}
});
buttonField.add(startGenomeSpaceDownloadBtn);
startGenomeSpaceDownloadBtn.setStyleName("elv-Download-Button");
startGenomeSpaceDownloadBtn.setTitle(
"Clicking this button should open a window to import the data to GenomeSpace. "
+ "Depending on your browser configuration, you may have to enable popups for the Reactome website");
startGenomeSpaceDownloadBtn.addClickHandler(
new ClickHandler() {
@Override
public void onClick(ClickEvent event) {
if ((chemTB.getValue() || protTB.getValue() || sequTB.getValue() || otheTB.getValue())
&& (typeTB.getValue() || nameTB.getValue() || identifierTB.getValue())) {
Integer randomInt = random.nextInt(1000 - 1) + 1;
try {
uploadListToGenomeSpace(textArea.getText(), randomInt.toString());
} catch (JavaScriptException exception) {
Window.alert(exception.getMessage());
}
} else {
Window.alert(
"You are trying to download an empty file.\n"
+ "Please select at least one type of molecules AND one field for the download.");
}
presenter.moleculeDownloadStarted();
}
});
// Bringing together the two panels.
FlowPanel controlArea = new FlowPanel();
controlArea.insert(requiredType.asWidget(), 0);
controlArea.insert(requiredFields.asWidget(), 1);
ScrollPanel scrollPanel = new ScrollPanel(controlArea);
this.addWest(scrollPanel, 200);
this.addEast(buttonField, 100);
// Preview
this.textArea = new TextArea();
this.textArea.setVisible(true);
this.textArea.setTitle("Preview of what your download file will look like.");
this.textArea.setText(resultToText());
this.add(textArea);
this.textArea.setStyleName("elv-PreviewPanel-Download");
this.addStyleName("elv-Details-OverviewPanel");
}
