private void connectOutputLocationAndFileTable() {
if (files != null) {
files.addValueChangeHandler(
new ValueChangeHandler<Void>() {
@Override
public void onValueChange(final ValueChangeEvent<Void> event) {
updateOutputLocation();
}
});
}
}
private void connectTitleAndFileTable() {
if (files != null) {
files.addValueChangeHandler(
new ValueChangeHandler<Void>() {
@Override
public void onValueChange(final ValueChangeEvent<Void> event) {
updateTitleFromFileTable();
}
});
}
}
private void updateTitleFromFileTable() {
// User edited the title field. We have no business here
if (userEditedTitle) {
return;
}
List<String> names = files.getFileNames();
if (names.size() == 0) {
setTitleText("");
} else {
Iterator<String> iterator = names.iterator();
String longestPrefix = iterator.next();
while (iterator.hasNext()) {
String next = iterator.next();
for (int i = 0; i < Math.min(longestPrefix.length(), next.length()); i++) {
if (next.charAt(i) != longestPrefix.charAt(i)) {
longestPrefix = longestPrefix.substring(0, i);
break;
}
}
}
// The users like to name files with underscores separating different fields.
// If we detect more than 1 underscore, we will try to remove everything beyond the last
// underscore
// That takes care of test_S1, test_S2, test_S3 or test_Inj1, test_Inj2 type of repeats,
// resulting
// with just "test".
// If there is just one underscore, we remove it if it is the last one.
int numUnderscores = longestPrefix.length() - longestPrefix.replaceAll("_", "").length();
if (numUnderscores <= 1) {
longestPrefix = longestPrefix.replaceAll("_$", "");
} else {
longestPrefix = longestPrefix.replaceAll("_[^_]*$", "");
}
setTitleText(longestPrefix + paramsEditor.getTitleSuffix());
}
updateOutputLocation();
}
private List<ClientFileSearch> getFileSearches() {
return files != null ? files.getData() : null;
}
/** Check query string to see if the user wants to load previous search data into the forms. */
private void loadPreviousSearch(final ClientLoadedSearch result) {
if (result == null) {
return;
}
final ClientSwiftSearchDefinition definition = result.getDefinition();
displayMessage("Loaded previous search " + definition.getSearchTitle());
if (result.getClientParamSetList() != null) {
// We transfered a new parameter set list together with search definition
// Update the parameter editor.
paramsEditor.setParamSetList(result.getClientParamSetList());
}
paramsEditor.setSelectedParamSet(result.getDefinition().getParamSet());
// Determine search type
SearchType searchType = null;
for (final ClientFileSearch clientFileSearch : definition.getInputFiles()) {
final String fileNamefileNameWithoutExtension =
FilePathWidget.getFileNameWithoutExtension(clientFileSearch.getPath());
final SearchType newSearchType =
SearchTypeList.getSearchTypeFromSetup(
definition.getSearchTitle(),
fileNamefileNameWithoutExtension,
clientFileSearch.getExperiment(),
clientFileSearch.getBiologicalSample());
if (searchType == null) {
searchType = newSearchType;
} else {
if (!searchType.equals(newSearchType)) {
searchType = SearchType.Custom;
break;
}
}
}
final String title = definition.getSearchTitle();
setTitleText(title);
if (spectrumQaSetupPanel != null) {
spectrumQaSetupPanel.setParameters(definition.getSpectrumQa());
}
if (reportSetupPanel != null) {
reportSetupPanel.setParameters(definition.getPeptideReport());
}
final List<ClientFileSearch> inputFiles = definition.getInputFiles();
files.setFiles(inputFiles, searchType);
selectUser(definition.getUser().getEmail());
final String filePath = getOutputPathFromFileTable(inputFiles);
// If the loaded path differs from what the file table would produce, it is user-specified
// .. set the proper flags
if (definition.getOutputFolder() == null || !definition.getOutputFolder().equals(filePath)) {
outputPathUserSpecified = true;
}
outputPath = definition.getOutputFolder();
output.setText(outputPath);
updateOutputLocation();
additionalSettingsPanel.setDefinition(definition);
showPageContentsAfterLoad();
}