@Override
public void safeActionPerformed(ActionEvent e) throws Exception {
String fileName;
fileName = study.getStudyName() + "_consensus_matrix";
File currentDirectory = new File(studyFile.getParent());
currentDirectory.mkdir();
JFileChooser fileChooser = new JFileChooser();
fileChooser.setFileFilter(new FileNameExtensionFilter("Comma-Separated Values", "csv"));
fileChooser.setCurrentDirectory(currentDirectory);
fileChooser.setSelectedFile(new File(fileName + ".csv"));
fileChooser.setDialogTitle("Save Consensus Matrix (CSV)");
fileChooser.setFileSelectionMode(JFileChooser.FILES_AND_DIRECTORIES);
int returnValue = JFileChooser.APPROVE_OPTION;
while (returnValue == JFileChooser.APPROVE_OPTION) {
returnValue = fileChooser.showSaveDialog(parent);
File dataFile = fileChooser.getSelectedFile();
try {
if (dataFile != null && !dataFile.isDirectory()) {
String path = dataFile.getAbsolutePath();
if (!path.endsWith(".csv")) {
path += ".csv";
dataFile = new File(path);
}
Integer missingAllowed = 2;
String missingString =
(String)
JOptionPane.showInputDialog(
self,
"How many alters can a reporter not report on?"
+ "\n (Enter a number)",
"Allowed missing values - filled in randomly",
JOptionPane.PLAIN_MESSAGE,
null,
null,
missingAllowed + "");
try {
missingAllowed = Integer.parseInt(missingString);
} catch (Exception ex) {
JOptionPane.showMessageDialog(
self,
"Didn't understand how many alters a reporter is allowed to not report on."
+ "\nFalling back on default value of "
+ missingAllowed
+ ".");
}
String msg = new ConsensusDataWriter(net, missingAllowed).writeToFile(dataFile);
JOptionPane.showMessageDialog(self, msg);
}
} catch (Exception e1) {
throw new RuntimeException(e1);
}
break;
}
}
@Override
public void safeActionPerformed(ActionEvent e) throws Exception {
String fileName;
fileName = study.getStudyName() + "_wholenetwork_edgelist";
File currentDirectory = new File(studyFile.getParent() + "/Graphs");
currentDirectory.mkdir();
JFileChooser fileChooser = new JFileChooser();
fileChooser.setFileFilter(new FileNameExtensionFilter("Comma-Separated Values", "csv"));
fileChooser.setCurrentDirectory(currentDirectory);
fileChooser.setSelectedFile(new File(fileName + ".csv"));
fileChooser.setDialogTitle("Save Whole Network Adjacency Matrix (CSV)");
fileChooser.setFileSelectionMode(JFileChooser.FILES_AND_DIRECTORIES);
int returnValue = JFileChooser.APPROVE_OPTION;
while (returnValue == JFileChooser.APPROVE_OPTION) {
returnValue = fileChooser.showSaveDialog(parent);
File dataFile = fileChooser.getSelectedFile();
try {
if (dataFile != null && !dataFile.isDirectory()) {
String path = dataFile.getAbsolutePath();
if (!path.endsWith(".csv")) {
path += ".csv";
dataFile = new File(path);
}
AdjacencyWriter fw = new AdjacencyWriter(dataFile);
Pair<String[], int[][]> p = net.getAdjacencyMatrix();
fw.writeAdjacency(p.getFirst(), p.getSecond());
fw.close();
}
} catch (Exception e1) {
throw new RuntimeException(e1);
}
break;
}
}
@Override
public void safeActionPerformed(ActionEvent e) throws Exception {
String fileName;
fileName = study.getStudyName() + "_wholenetwork_nodes";
File currentDirectory = new File(studyFile.getParent() + "/Graphs");
currentDirectory.mkdir();
JFileChooser fileChooser = new JFileChooser();
fileChooser.setFileFilter(new FileNameExtensionFilter("Comma-Separated Values", "csv"));
fileChooser.setCurrentDirectory(currentDirectory);
fileChooser.setSelectedFile(new File(fileName + ".csv"));
fileChooser.setDialogTitle("Save Alter Attributes (CSV)");
fileChooser.setFileSelectionMode(JFileChooser.FILES_AND_DIRECTORIES);
int returnValue = JFileChooser.APPROVE_OPTION;
while (returnValue == JFileChooser.APPROVE_OPTION) {
returnValue = fileChooser.showSaveDialog(parent);
File dataFile = fileChooser.getSelectedFile();
try {
if (dataFile != null && !dataFile.isDirectory()) {
String path = dataFile.getAbsolutePath();
if (!path.endsWith(".csv")) {
path += ".csv";
dataFile = new File(path);
}
FileWriter fw = new FileWriter(dataFile);
CSVWriter csv = new CSVWriter(fw);
Set<String> questionSet = Sets.newHashSet();
for (WholeNetworkAlter alter : net.getWholeNetworkAlters().values()) {
questionSet.addAll(alter.getAttributes().keySet());
}
List<String> questionList = new ArrayList<String>(questionSet);
List<String> heading = Lists.newArrayList("MappingId", "Name");
heading.addAll(questionList);
csv.writeNext(heading.toArray(new String[] {}));
for (WholeNetworkAlter alter : net.getWholeNetworkAlters().values()) {
ArrayList<String> row =
Lists.newArrayList(
alter.getId() + "",
alter
.getOccurences()
.get(0)
.toString()
.replaceAll("[^a-zA-Z_\\-0-9]+", "_"));
Map<String, String> answers = alter.getAttributes();
for (String question : questionList) {
String value = answers.get(question);
row.add(value == null ? "" : value);
}
csv.writeNext(row.toArray(new String[] {}));
}
csv.flush();
fw.close();
}
} catch (Exception e1) {
throw new RuntimeException(e1);
}
break;
}
}