@Test
@Override
public void testChromMT(@ArquillianResource URL url) throws JAXBException, MalformedURLException {
String[] query = {"MT", "41087870", "A", null};
BeaconResponseTo br = readBeaconResponse(url.toExternalForm() + getUrl(BEACON, query));
assertNotNull(br);
assertTrue(beaconsMatch(br.getBeacon(), BEACON));
assertTrue(queriesMatch(br.getQuery(), query));
assertNotNull(br.getResponse());
}
@Test
@Override
public void testSpecificRefNotFound(@ArquillianResource URL url)
throws JAXBException, MalformedURLException {
String[] query = {"1", "808922", "A", "hg38"};
BeaconResponseTo br = readBeaconResponse(url.toExternalForm() + getUrl(BEACON, query));
assertNotNull(br);
assertTrue(beaconsMatch(br.getBeacon(), BEACON));
assertTrue(queriesMatch(br.getQuery(), query));
assertTrue(br.getResponse() == null || !br.getResponse());
}
@Test
@Override
public void testInvalidRef(@ArquillianResource URL url)
throws JAXBException, MalformedURLException {
String[] query = {"1", "808922", "A", "hg100"};
BeaconResponseTo br = readBeaconResponse(url.toExternalForm() + getUrl(BEACON, query));
assertNotNull(br);
assertTrue(beaconsMatch(br.getBeacon(), BEACON));
assertTrue(getNonMachingFields(br.getQuery(), query).size() == 1);
assertEquals(br.getQuery().getReference(), null);
assertNull(br.getResponse());
}
@Test
@Override
public void testInvalidChrom(@ArquillianResource URL url)
throws JAXBException, MalformedURLException {
String[] query = {"30", "41087870", "A", null};
BeaconResponseTo br = readBeaconResponse(url.toExternalForm() + getUrl(BEACON, query));
assertNotNull(br);
assertTrue(beaconsMatch(br.getBeacon(), BEACON));
assertTrue(getNonMachingFields(br.getQuery(), query).size() == 1);
assertNull(br.getQuery().getChromosome());
assertNull(br.getResponse());
}
@Test
@Override
public void testAlleleConversion(@ArquillianResource URL url)
throws JAXBException, MalformedURLException {
String[] query = {"14", "106833421", "DEL", null};
BeaconResponseTo br = readBeaconResponse(url.toExternalForm() + getUrl(BEACON, query));
assertNotNull(br);
assertTrue(beaconsMatch(br.getBeacon(), BEACON));
assertTrue(getNonMachingFields(br.getQuery(), query).size() == 1);
assertEquals(query[2].substring(0, 1), br.getQuery().getAllele());
assertNotNull(br.getResponse());
}
@Test
@Override
public void testChromConversion(@ArquillianResource URL url)
throws JAXBException, MalformedURLException {
String[] query = {"chrom14", "106833421", "D", null};
BeaconResponseTo br = readBeaconResponse(url.toExternalForm() + getUrl(BEACON, query));
assertNotNull(br);
assertTrue(beaconsMatch(br.getBeacon(), BEACON));
assertTrue(
(getNonMachingFields(br.getQuery(), query).size() == 1)
&& (getNonMachingFields(br.getQuery(), query).contains(0)));
assertNotNull(br.getResponse());
}
@Test
@Override
public void testStringAllele(@ArquillianResource URL url)
throws JAXBException, MalformedURLException {
String[] query = {"22", "17213590", "TGTTA", null};
BeaconResponseTo br = readBeaconResponse(url.toExternalForm() + getUrl(BEACON, query));
assertNotNull(br);
assertTrue(beaconsMatch(br.getBeacon(), BEACON));
assertTrue(queriesMatch(br.getQuery(), query));
// unsupported
assertFalse(br.getResponse());
}