/**
* Open the UniProt download page for the given species.
*
* @param evt
*/
private void downloadUniProtJLabelMouseClicked(
java.awt.event.MouseEvent evt) { // GEN-FIRST:event_downloadUniProtJLabelMouseClicked
// @TODO: for "Mus musculus (Mouse)" get rid of "(Mouse)" before searching
if (downloadUniProtJLabel.isEnabled()) {
this.setCursor(new java.awt.Cursor(java.awt.Cursor.WAIT_CURSOR));
BareBonesBrowserLaunch.openURL(
"http://www.uniprot.org/uniprot/?query=%28organism%3A%22"
+ species
+ "%22%29&sort=score");
this.setCursor(new java.awt.Cursor(java.awt.Cursor.DEFAULT_CURSOR));
}
} // GEN-LAST:event_downloadUniProtJLabelMouseClicked
/**
* Carry out actions upon user clicks.
*
* @param evt
*/
private void displayPanelMouseClicked(
java.awt.event.MouseEvent evt) { // GEN-FIRST:event_displayPanelMouseClicked
if (currentDisplayPanelIndex == displayPanels.size() - 1) {
setCursor(new java.awt.Cursor(java.awt.Cursor.WAIT_CURSOR));
setVisible(false);
if (welcomeDialog != null) {
welcomeDialog.setVisible(false);
}
peptideShakerGUI.setVisible(true);
dispose();
peptideShakerGUI.openExampleFile();
setCursor(new java.awt.Cursor(java.awt.Cursor.DEFAULT_CURSOR));
} else if (currentDisplayPanelIndex == 1) {
setCursor(new java.awt.Cursor(java.awt.Cursor.WAIT_CURSOR));
BareBonesBrowserLaunch.openURL("http://compomics.github.io/projects/searchgui.html");
setCursor(new java.awt.Cursor(java.awt.Cursor.DEFAULT_CURSOR));
}
} // GEN-LAST:event_displayPanelMouseClicked
/**
* Sets the main match if the main match column is selected, or opens the protein web link if the
* accession number column is selected.
*
* @param evt
*/
private void proteinMatchTableMouseReleased(
java.awt.event.MouseEvent evt) { // GEN-FIRST:event_proteinMatchTableMouseReleased
int row = proteinMatchTable.rowAtPoint(evt.getPoint());
int column = proteinMatchTable.columnAtPoint(evt.getPoint());
if (row != -1) {
if (column == 1) {
try {
inspectedMatch.setMainMatch(accessions.get(row));
identification.updateProteinMatch(inspectedMatch);
peptideShakerGUI
.getIdentificationFeaturesGenerator()
.updateCoverableAA(inspectedMatch.getKey());
peptideShakerGUI
.getIdentificationFeaturesGenerator()
.updateSequenceCoverage(inspectedMatch.getKey());
peptideShakerGUI
.getIdentificationFeaturesGenerator()
.updateObservableCoverage(inspectedMatch.getKey());
} catch (Exception e) {
peptideShakerGUI.catchException(e);
}
proteinMatchTable.revalidate();
proteinMatchTable.repaint();
} else if (column == 2) {
// open protein link in web browser
if (evt.getButton() == MouseEvent.BUTTON1
&& ((String) proteinMatchTable.getValueAt(row, column)).lastIndexOf("<html>") != -1) {
String link = (String) proteinMatchTable.getValueAt(row, column);
link = link.substring(link.indexOf("\"") + 1);
link = link.substring(0, link.indexOf("\""));
this.setCursor(new java.awt.Cursor(java.awt.Cursor.WAIT_CURSOR));
BareBonesBrowserLaunch.openURL(link);
this.setCursor(new java.awt.Cursor(java.awt.Cursor.DEFAULT_CURSOR));
}
}
}
} // GEN-LAST:event_proteinMatchTableMouseReleased
/**
* Open the ISAS web page.
*
* @param evt
*/
private void isasButtonActionPerformed(
java.awt.event.ActionEvent evt) { // GEN-FIRST:event_isasButtonActionPerformed
setCursor(new java.awt.Cursor(java.awt.Cursor.WAIT_CURSOR));
BareBonesBrowserLaunch.openURL("http://www.isas.de");
setCursor(new java.awt.Cursor(java.awt.Cursor.DEFAULT_CURSOR));
} // GEN-LAST:event_isasButtonActionPerformed
/**
* Open the Compomics web page.
*
* @param evt
*/
private void compomicsButtonActionPerformed(
java.awt.event.ActionEvent evt) { // GEN-FIRST:event_compomicsButtonActionPerformed
setCursor(new java.awt.Cursor(java.awt.Cursor.WAIT_CURSOR));
BareBonesBrowserLaunch.openURL("http://compomics.wordpress.com");
setCursor(new java.awt.Cursor(java.awt.Cursor.DEFAULT_CURSOR));
} // GEN-LAST:event_compomicsButtonActionPerformed
/**
* Open the database help web page.
*
* @param evt
*/
private void databaseHelpSettingsJLabelMouseClicked(
java.awt.event.MouseEvent evt) { // GEN-FIRST:event_databaseHelpSettingsJLabelMouseClicked
this.setCursor(new java.awt.Cursor(java.awt.Cursor.WAIT_CURSOR));
BareBonesBrowserLaunch.openURL("http://compomics.github.io/searchgui/wiki/databasehelp.html");
this.setCursor(new java.awt.Cursor(java.awt.Cursor.DEFAULT_CURSOR));
} // GEN-LAST:event_databaseHelpSettingsJLabelMouseClicked