private void writeCoordinateVariable(VariableEntry variable, NetcdfFileWriteable ncFile)
throws IOException, InvalidRangeException {
int[] dimensions = {variable.getSize()};
Array array;
// so far, everything is a float or an int
// way too much code duplication but I'm done fightin java for now
if (variable.getType() == DataType.INT) {
array = new ArrayInt(dimensions);
int tempInt = 0;
IndexIterator iter = array.getIndexIterator();
while (iter.hasNext()) {
iter.getIntNext();
iter.setIntCurrent(tempInt);
tempInt++;
}
ncFile.write(variable.getVariableName(), array);
} else if (variable.getType() == DataType.FLOAT) {
array = new ArrayFloat(dimensions);
float tempFloat = 0;
IndexIterator iter = array.getIndexIterator();
while (iter.hasNext()) {
iter.getFloatNext();
iter.setFloatCurrent(tempFloat);
tempFloat++;
}
ncFile.write(variable.getVariableName(), array);
} else if (variable.getType() == DataType.LONG) {
array = new ArrayLong(dimensions);
long tempLong = 0;
IndexIterator iter = array.getIndexIterator();
while (iter.hasNext()) {
iter.getLongNext();
iter.setLongCurrent(tempLong);
tempLong++;
}
ncFile.write(variable.getVariableName(), array);
}
// ncFile.write(variable.getVariableName(),array);
}
private NetcdfFileWriteable writeNetcdfMetadata(
NetcdfFileWriteable ncFile,
String variableName,
ArrayList<ArrayList<VariableEntry>> variableListList)
throws IOException {
int suffixInt = 1;
for (ArrayList<VariableEntry> variableList : variableListList) {
ArrayList<Dimension> dims = new ArrayList<Dimension>();
// add coordinate variables for each dimension
for (int i = 0; i < variableList.size(); i++) {
VariableEntry temp = variableList.get(i);
Dimension tempDim;
System.out.println("writing metadata for dim " + temp.getVariableName());
if (temp.isUnlimited()) {
// see if there is already an unlimited dimension in this filea,
// if so, use it. If not, add it
// if ( ncFile.hasUnlimitedDimension() ) {
if (this._unlimitedDim == null) {
tempDim = ncFile.addUnlimitedDimension(temp.getVariableName());
this._unlimitedDim = tempDim;
} else {
// tempDim = this._unlimitedDim;
dims.add(this._unlimitedDim);
continue;
}
} else {
tempDim = ncFile.addDimension(temp.getVariableName(), temp.getSize());
}
// add a coordinate variable
Dimension[] tempDimArray = {tempDim};
ncFile.addVariable(temp.getVariableName(), temp.getType(), tempDimArray);
ncFile.addVariableAttribute(temp.getVariableName(), "units", temp.getUnits());
ncFile.addVariableAttribute(temp.getVariableName(), "long_name", temp.getLongName());
dims.add(tempDim);
}
// add the main variable
System.out.println("adding variable " + (variableName + Integer.toString(suffixInt)));
ncFile.addVariable(variableName + Integer.toString(suffixInt), DataType.INT, dims);
suffixInt++;
}
/*
ArrayList<Dimension> dims = new ArrayList<Dimension>();
Dimension tempDim;
String localName = "dim";
for( int i = 0; i < dimensions.length; i++){
if ( (0 == i) && variableDim) {
tempDim = ncFile.addUnlimitedDimension("dim" + Integer.toString(i));
} else {
tempDim = ncFile.addDimension("dim" + Integer.toString(i), dimensions[i]);
}
dims.add( tempDim);
}
ncFile.addVariable(varName, dataType, dims);
*/
return ncFile;
}
