private TrialDialog(final WizardUI parent) {
super(parent, UIMessages.getMessage(UIMessages.UI_TRIAL_TITLE), true);
setDefaultCloseOperation(DISPOSE_ON_CLOSE);
String strMsg = null;
try {
strMsg =
Util.readStream(
UIMessages.class.getResourceAsStream(UIMessages.getMessage(UIMessages.RSRC_TRIAL)));
} catch (IOException e) {
strMsg = UIMessages.getMessage(UIMessages.ERR_TRIAL_LOAD);
}
// Label for trial info
// The HTML must constrain the width, or the label lays it out too wide
// XXX http://developer.java.sun.com/developer/bugParade/bugs/4348815.html
JLabel lblMsg = new JLabel(strMsg);
// Link to purchase
HyperLabel lblPurchase =
new HyperLabel(
UIMessages.getMessage(UIMessages.UI_LABEL_PURCHASE),
UIMessages.getMessage(UIMessages.URL_PURCHASE));
// Link to register
HyperLabel lblRegister =
new HyperLabel(
UIMessages.getMessage(UIMessages.UI_LABEL_REGISTER), parent.getRegistrationURL());
// Button to enter license
JButton btnLicense = new JButton(UIMessages.getMessage(UIMessages.UI_BUTTON_TRIAL_LICENSE));
btnLicense.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
parent.showLicenseDialog(TrialDialog.this);
}
});
// OK button
JButton btnOK = new JButton(UIMessages.getMessage(UIMessages.UI_BUTTON_OK));
btnOK.addActionListener(new DisposeHandler(this));
// Lay it all out
Container panel = getContentPane();
panel.setLayout(new GridBagLayout());
WizardGBC gbc = new WizardGBC();
gbc.reset();
gbc.fill = gbc.BOTH;
gbc.weightx = 1;
gbc.weighty = 1;
gbc.gridwidth = 2;
gbc.insets.top = gbc.insets.left = gbc.insets.right = 5;
panel.add(lblMsg, gbc);
gbc.reset();
gbc.gridx = 0;
gbc.gridy = 2;
gbc.anchor = gbc.WEST;
gbc.weightx = 1;
gbc.insets.top = gbc.insets.left = 5;
panel.add(lblRegister, gbc);
gbc.reset();
gbc.gridx = 1;
gbc.gridy = 1;
gbc.insets.top = gbc.insets.right = 5;
panel.add(lblPurchase, gbc);
gbc.reset();
gbc.gridx = 1;
gbc.gridy = 2;
gbc.insets.top = gbc.insets.right = 5;
panel.add(btnLicense, gbc);
gbc.reset();
gbc.gridy = 3;
gbc.fill = gbc.HORIZONTAL;
gbc.weightx = 1;
gbc.gridwidth = 2;
gbc.insets.top = 10;
panel.add(new JSeparator(), gbc);
gbc.reset();
gbc.gridy = 4;
gbc.anchor = gbc.CENTER;
gbc.gridwidth = 2;
gbc.insets.top = gbc.insets.bottom = 10;
panel.add(btnOK, gbc);
pack();
}
/**
* Checks conditions and starts the algorithm.
*
* @param evt
*/
private void runButtonActionPerformed(java.awt.event.ActionEvent evt) {
if (this.projectComboBox.getSelectedItem().equals("")) {
UIMessages.showErrorMessage("Please select a project", "Error");
return;
}
if (this.traitSetComboBox.getSelectedIndex() < 0) {
UIMessages.showErrorMessage("Please select a trait option", "Error");
return;
}
String projectName = projectComboBox.getSelectedItem().toString();
String traitName = traitSetComboBox.getSelectedItem().toString();
String markerName = markerSetComboBox.getSelectedItem().toString();
Project ap = Model.getInstance().getProject(projectName);
TraitSet ts = ap.getTrait(traitName);
MarkerSet ms = ap.getMarker(markerName);
if (this.algorithmComboBox.getSelectedIndex() < 0
&& !this.loadAssociationRadioButton.isSelected()) {
UIMessages.showErrorMessage("Please select an algorithm", "Error");
return;
}
if (this.algorithmComboBox.getSelectedItem().equals("Adaptive Multi-Task Lasso")) {
ArrayList<String> where = new ArrayList<String>();
where.add("markersetid = " + ms.getId());
if (Integer.parseInt(
DataManager.runSelectQuery("count(*)", "feature", true, where, null).get(0))
< 1) {
UIMessages.showErrorMessage("Selected marker set does not have features", "Error");
return;
}
}
if (this.markerSetComboBox.getSelectedIndex() < 0) {
UIMessages.showErrorMessage("Please select a marker", "Error");
return;
}
if (this.networkComboBox.getSelectedIndex() < 0 && this.networkComboBox.isEnabled()) {
UIMessages.showErrorMessage(
"Please select a valid network option for selected algorithm", "Error");
return;
}
if (this.networkComboBox.getSelectedIndex() < 0 && this.networkComboBox.isEnabled()) {
UIMessages.showErrorMessage(
"Please select a valid Population option for selected algorithm", "Error");
return;
}
if (this.numberComboBox.isEnabled() && this.numberComboBox.getSelectedIndex() < 0) {
UIMessages.showErrorMessage(
"Please select a valid Population option for this algorithm", "Error");
return;
}
if (this.nameTextField.getText().equals("")) {
UIMessages.showErrorMessage("Please specify a valid name", "Error");
return;
}
if (Model.getInstance()
.getProject(projectComboBox.getSelectedItem().toString())
.isAssocNamePresentInProject(this.nameTextField.getText())) {
UIMessages.showErrorMessage("Specified name already exists for this project", "Error");
return;
}
String networkName = this.networkComboBox.getSelectedItem().toString();
String algoName = this.algorithmComboBox.getSelectedItem().toString();
String popno = this.numberComboBox.getSelectedItem().toString();
if (!this.numberComboBox.isEnabled()) {
popno = "1";
}
algoName = (algoName.equals("")) ? null : algoName;
Network net = (Network) ts.getTraitStructure(networkName);
if (ts.getNetworks().size() == 0) // without a network, we will be unable
// to view this visualization, so we add it here.
{
try {
view.addAlgorithm(
Algorithms.NetworkAlgorithms.algonames().get(0),
Algorithms.NetworkAlgorithms.jobTypeID().get(0),
ap.getId(),
ts.getId(),
ms.getId());
} catch (Exception e) {
}
}
if (this.createAssociationRadioButton.isSelected()) {
int structtype =
algorithmComboBox.getSelectedIndex() < 0
? -1
: Algorithms.AssociationAlgorithms.inputStructure()
.get(algorithmComboBox.getSelectedIndex());
IOFilesForIOLasso ioffio = null;
if (structtype == 3) {
ioffio = new IOFilesForIOLasso(currentComponentReference);
ioffio.setVisible(true);
if (ioffio.getInputFilePath() == null
|| ioffio.getInputFilePath().length() < 5
|| ioffio.getOutputFilePath() == null
|| ioffio.getOutputFilePath().length() < 5) {
UIMessages.showErrorMessage("I/O Lasso needs valid group files", "Error");
return;
}
}
AssociationParameterObject apo =
new AssociationParameterObject(
(Network) ts.getTraitStructure(networkName),
this.nameTextField.getText(),
ms.getPopulation(networkName),
popno,
ioffio);
int idx = this.algorithmComboBox.getSelectedIndex() - 1;
view.addAlgorithm(
Algorithms.AssociationAlgorithms.algonames().get(idx),
Algorithms.AssociationAlgorithms.jobTypeID().get(idx),
ap.getId(),
ts.getId(),
ms.getId(),
apo);
} else {
DataAddRemoveHandler.getInstance()
.addAssociation(
ap.getId(),
ts,
ms,
this.nameTextField.getText(),
this.associationFilePathTextField.getText(),
null);
}
this.dispose();
}
