private void addTranscripts() {
// 1. show a simple dialog to take in fasta sequences
EnterTranscriptsDialog dialog = new EnterTranscriptsDialog(getDialogForComponent(this));
dialog.setVisible(true);
if (dialog.isCanceled()) return;
ArrayList transcripts = dialog.getTranscripts();
// 2. add to table
model.addTranscript(transcripts);
model.fireTableDataChanged();
}
public TargetTablePanel(String[] targetData, String delim, int id_colIdx, int length_colIdx)
throws Exception { // exception when there are data format problem in targetData
JTextArea jta_desc =
new JTextArea(
"Pick the primary and secondary targets. siRNA oligos will be enumerated from the primary target"
+ " and their occurrence in secondary targets (orthologs) will be reported. By default, the longest human transcript is selected"
+ " as the primary target. Any other transcripts longer than half the length of the primary transcript are selected as secondary transcripts\n");
jta_desc.setEditable(false);
jta_desc.setWrapStyleWord(true);
jta_desc.setLineWrap(true);
jta_desc.setBackground(new JLabel().getBackground());
this.setLayout(new BorderLayout());
this.add(jta_desc, BorderLayout.NORTH);
model = new TargetTableModel(targetData, delim, id_colIdx, length_colIdx);
model.addTableModelListener(this);
sorter = new SimpleTableSorter(model);
targetTable.setDragEnabled(true);
targetTable.setModel(sorter);
targetTable.createDefaultColumnsFromModel();
targetTable.addMouseListener(new TargetTableMouseAdaptor());
sorter.setTableHeader(targetTable.getTableHeader());
jsp_center = new JScrollPane(targetTable);
Dimension d = jsp_center.getViewport().getViewSize();
d.height = 300;
jsp_center.getViewport().setViewSize(d);
this.add(jsp_center, BorderLayout.CENTER);
setupCellRenderer();
JPanel bttn_pane = new JPanel();
bttn_pane.setLayout(new FlowLayout(FlowLayout.TRAILING));
bttn_addTranscript = new JButton("Add Transcripts");
bttn_pane.add(bttn_addTranscript);
bttn_addTranscript.addActionListener(this);
bttn_deleteTranscript = new JButton("Delete Selected");
bttn_deleteTranscript.addActionListener(this);
bttn_pane.add(bttn_deleteTranscript);
this.add(bttn_pane, BorderLayout.SOUTH);
this.setPreferredSize(d);
}
private void deleteTranscripts() {
int[] selected = targetTable.getSelectedRows();
model.removeRows(selected);
model.fireTableDataChanged();
}
