@Test
public void testReaderReturnsEmptyIteratorForNullValue() {
Mockito.when(tabixReader.query("13:12-12")).thenReturn(null);
Iterable<Entity> actual =
tabixRepository.findAll(tabixRepository.query().eq(CHROM, "13").and().eq(POS, 12));
assertEquals(Collections.emptyList(), Lists.newArrayList(actual));
}
@Test
public void testReaderFiltersRows() throws IOException {
Mockito.when(tabixReader.query("13:12-12")).thenReturn(iterator);
Mockito.when(iterator.next())
.thenReturn(
"id1\t13\t11\tnope", "id2\t13\t12\tyup", "id3\t13\t12\tyup", "id3\t13\t13\tnope", null);
Iterable<Entity> actual =
tabixRepository.findAll(tabixRepository.query().eq(CHROM, "13").and().eq(POS, 12));
Entity e1 = new MapEntity(entityMetaData);
e1.set("ID", "id2");
e1.set("#CHROM", "13");
e1.set("POS", 12l);
e1.set("Description", "yup");
Entity e2 = new MapEntity(entityMetaData);
e2.set("ID", "id3");
e2.set("#CHROM", "13");
e2.set("POS", 12l);
e2.set("Description", "yup");
assertEquals(Lists.newArrayList(actual), Arrays.asList(e1, e2));
}