public void testEmptyFasta() throws IOException {
final SequencesReader reader = ReaderTestUtils.getReaderDNA("", mDir, new SdfId(0L));
reader.close();
final CompressedMemorySequencesReader cmsr =
new CompressedMemorySequencesReader(
mDir, new IndexFile(mDir), 5, true, false, new LongRange(0, 0));
assertEquals(0, cmsr.numberSequences());
}
public static void makeTestTaxonSdf(File dest) throws IOException {
final String sequences =
FileHelper.resourceToString("com/rtg/reader/resources/sequences.fasta");
ReaderTestUtils.getReaderDNA(sequences, dest, null).close();
// cp taxonomy files to sdf
final File taxonomy = new File(dest, "taxonomy.tsv");
FileHelper.resourceToFile("com/rtg/reader/resources/taxonomy.tsv", taxonomy);
final File taxonomyLookup = new File(dest, "taxonomy_lookup.tsv");
FileHelper.resourceToFile("com/rtg/reader/resources/taxonomy_lookup.tsv", taxonomyLookup);
}
