public void updateProteins(HashMap<String, Protein> mainProteins) {
minProteins = new HashMap<String, Protein>();
for (Peptide pg : minPeptides.values()) {
String pepName = pg.getSequence();
for (String protName : pg.getProteins()) {
if (minProteins.containsKey(protName)) {
Protein prot = minProteins.get(protName);
prot.addPeptide(pepName);
} else {
Protein prot = mainProteins.get(protName);
minProteins.put(protName, prot);
}
}
}
for (Peptide pg : minPeptides.values()) {
pg.updateProteins(minProteins);
}
for (Protein p : minProteins.values()) {
p.updatePeptides(minPeptides);
}
}
