private JCheckBoxMenuItem addFilterMenuItem(
String command, boolean defaultlistener, ParticlePicker picker) {
JCheckBoxMenuItem mi = new JCheckBoxMenuItem(command);
mifilters.add(mi);
mi.setSelected(picker.isFilterAdded(command));
if (defaultlistener) mi.addActionListener(this);
filtersmn.add(mi);
// mi.setEnabled(picker.getMode() != Mode.ReadOnly);
return mi;
}
private void initMenuBar(ParticlePicker picker) {
filemn = new JMenu(bundle.getString("file"));
helpmn = new JMenu(bundle.getString("help"));
savemi = new JMenuItem("Save", XmippResource.getIcon("save.gif"));
savemi.setMnemonic('S');
savemi.setAccelerator(KeyStroke.getKeyStroke(KeyEvent.VK_S, InputEvent.CTRL_DOWN_MASK));
savemi.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
getParticlePicker().saveData();
showMessage("Data saved successfully");
setChanged(false);
}
});
filemn.add(savemi);
importmi = new JMenuItem("Import coordinates...", XmippResource.getIcon("import_wiz.gif"));
filemn.add(importmi);
if (picker.getMode() != Mode.Manual) importmi.setEnabled(false);
importmi.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
if (importpjd == null)
importpjd = new ImportParticlesJDialog(ParticlePickerJFrame.this);
importpjd.showDialog();
}
});
exitmi = new JMenuItem("Exit");
exitmi.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent arg0) {
close();
}
});
ijmi = new JMenuItem("ImageJ", XmippResource.getIcon("ij.gif"));
ijmi.setEnabled(picker.getMode() != Mode.ReadOnly);
ijmi.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
XmippUtil.showImageJ(Tool.PICKER);
}
});
hcontentsmi = new JMenuItem("Online help", XmippResource.getIcon("online_help.gif"));
hcontentsmi.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
try {
openHelpURl();
} catch (Exception ex) {
showException(ex);
}
}
});
helpmn.add(hcontentsmi);
keyassistmi = new JMenuItem("Tips...", XmippResource.getIcon("bulb.png"));
keyassistmi.addActionListener(
new ActionListener() {
private QuickHelpJDialog keyassistdlg;
@Override
public void actionPerformed(ActionEvent e) {
if (keyassistdlg == null)
keyassistdlg =
new QuickHelpJDialog(ParticlePickerJFrame.this, false, "Tips", getKeyAssist());
keyassistdlg.setVisible(true);
}
});
helpmn.add(keyassistmi);
pmi = new JMenuItem("Particles", XmippResource.getIcon("table_view.gif"));
pmi.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
loadParticles(false);
}
});
mifilters = new ArrayList<JCheckBoxMenuItem>();
filtersmn = new JMenu(bundle.getString("filters"));
filtersmn.addMenuListener(
new MenuListener() {
@Override
public void menuCanceled(MenuEvent arg0) {
// TODO Auto-generated method stub
}
@Override
public void menuDeselected(MenuEvent arg0) {
// TODO Auto-generated method stub
}
@Override
public void menuSelected(MenuEvent arg0) {
boolean added;
for (JCheckBoxMenuItem mi : mifilters) {
added = getParticlePicker().isFilterAdded(mi.getText());
mi.setSelected(added);
}
}
});
addFilterMenuItem(XmippImageJ.gaussianBlurFilter, true, picker);
addFilterMenuItem(ParticlePicker.xmippsmoothfilter, true, picker);
addFilterMenuItem(XmippImageJ.bandPassFilter, true, picker);
addFilterMenuItem(XmippImageJ.enhanceContrastFilter, true, picker);
addFilterMenuItem(XmippImageJ.brightnessContrastFilter, true, picker);
// JCheckBoxMenuItem admi = addFilterMenuItem(XmippImageJ.anisotropicDiffFilter, false,
// picker);
// admi.addActionListener(new ActionListener()
// {
//
// @Override
// public void actionPerformed(ActionEvent e)
// {
// activefilter = "8-bit";
// IJ.run(activefilter);
// activefilter = ((JCheckBoxMenuItem) e.getSource()).getText();
// IJ.run(activefilter);
// }
// });
addFilterMenuItem(XmippImageJ.invertLUTFilter, true, picker);
addFilterMenuItem(XmippImageJ.substractBackgroundFilter, true, picker);
addFilterAppliedListener();
}
public ParticlePickerJFrame(ParticlePicker picker) {
try {
File file = new File(Filename.getXmippPath("resources"));
URL[] urls = new URL[] {file.toURI().toURL()};
ClassLoader loader = new URLClassLoader(urls);
bundle = ResourceBundle.getBundle("Bundle", Locale.getDefault(), loader);
XmippApplication.addInstance(false);
setDefaultCloseOperation(DO_NOTHING_ON_CLOSE);
addWindowListener(
new WindowAdapter() {
public void windowClosing(WindowEvent winEvt) {
if (getParticlePicker().isChanged()) {
XmippQuestionDialog qd =
new XmippQuestionDialog(
ParticlePickerJFrame.this, "Save changes before closing?");
boolean save = qd.showDialog();
if (save) getParticlePicker().saveData();
else if (qd.isCanceled()) return;
}
close();
}
});
initMenuBar(picker);
resetbt =
XmippWindowUtil.getTextButton(
bundle.getString("resetmic"),
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
String resetmsg = getResetMsg();
XmippQuestionDialog qd =
new XmippQuestionDialog(ParticlePickerJFrame.this, resetmsg, false);
if (qd.showDialog()) resetMicrograph();
}
});
savebt =
XmippWindowUtil.getTextIconButton(
bundle.getString("save"),
"save.gif",
new ActionListener() {
@Override
public void actionPerformed(ActionEvent arg0) {
getParticlePicker().saveData();
setChanged(false);
}
});
saveandexitbt =
XmippWindowUtil.getTextButton(
bundle.getString("saveandexit"),
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
if (getParticlePicker().getMode() != Mode.ReadOnly)
getParticlePicker().saveData();
if (getParticlePicker().isScipionSave()) {
int count = getParticlePicker().getParticlesCount();
if (count == 0) {
XmippDialog.showInfo(
ParticlePickerJFrame.this, XmippMessage.getEmptyFieldMsg("coordinates"));
return;
}
HashMap<String, String> msgfields = new HashMap<String, String>();
boolean createprot = getParticlePicker().getPort() == null;
if (createprot) msgfields.put("Run name:", "ProtUserCoordinates");
String msg =
String.format(
"<html>Are you sure you want to register a new set of Coordinates with <font color=red>%s</font> %s?",
count, (count != 1) ? "elements" : "element");
InputFieldsMessageDialog dlg =
new InputFieldsMessageDialog(ParticlePickerJFrame.this, "Question", msg);
if (dlg.action == InputFieldsMessageDialog.OK_OPTION)
executeScipionSaveAndExit();
} else close();
}
});
closebt =
XmippWindowUtil.getTextIconButton(
"Close",
"fa-times.png",
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
close();
}
});
if (picker.isScipionSave()) {
saveandexitbt.setText("Coordinates");
Image img =
Toolkit.getDefaultToolkit()
.getImage(
Filename.getXmippPath("resources" + File.separator + "fa-plus-circle.png"));
saveandexitbt.setIcon(new ImageIcon(img));
saveandexitbt.setToolTipText("Create Coordinates");
Color color = XmippWindowUtil.firebrick;
saveandexitbt.setBackground(color);
saveandexitbt.setForeground(Color.WHITE);
}
micrographstb = new JTable();
micrographstb
.getSelectionModel()
.addListSelectionListener(new MicrographsSelectionListener());
micrographstb.addMouseListener(
new MouseListener() {
@Override
public void mouseReleased(MouseEvent arg0) {
// TODO Auto-generated method stub
}
@Override
public void mousePressed(MouseEvent arg0) {
// TODO Auto-generated method stub
}
@Override
public void mouseExited(MouseEvent arg0) {
// TODO Auto-generated method stub
}
@Override
public void mouseEntered(MouseEvent arg0) {
// TODO Auto-generated method stub
}
@Override
public void mouseClicked(MouseEvent arg0) {
if (micrographstb.getSelectedRow() == -1) return;
loadMicrograph();
}
});
} catch (Exception ex) {
Logger.getLogger(ParticlePickerJFrame.class.getName()).log(Level.SEVERE, null, ex);
throw new IllegalArgumentException(ex);
}
}
