Esempio n. 1
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 /**
  * Creates a color {@link ImagePlus} from a color {@link ImageDisplay}. Expects input expects
  * input ImageDisplay to have isRgbMerged() set with 3 channels of unsigned byte data.
  */
 @Override
 public ImagePlus createLegacyImage(final ImageDisplay display) {
   final ImageDisplayService imageDisplayService = context.getService(ImageDisplayService.class);
   final Dataset ds = imageDisplayService.getActiveDataset(display);
   final ImagePlus imp = makeColorImagePlus(ds);
   pixelHarmonizer.updateLegacyImage(ds, imp);
   metadataHarmonizer.updateLegacyImage(ds, imp);
   positionHarmonizer.updateLegacyImage(display, imp);
   return imp;
 }
Esempio n. 2
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  @Override
  public ImageDisplay createDisplay(final ImagePlus imp, final AxisType[] preferredOrder) {
    final Dataset ds = makeColorDataset(imp, preferredOrder);
    pixelHarmonizer.updateDataset(ds, imp);
    metadataHarmonizer.updateDataset(ds, imp);
    compositeHarmonizer.updateDataset(ds, imp);

    // CTR FIXME - add imageDisplayService.createImageDisplay method?
    // returns null if it cannot find an ImageDisplay-compatible display?
    final ImageDisplay display = (ImageDisplay) displayService.createDisplay(ds.getName(), ds);

    colorTableHarmonizer.updateDisplay(display, imp);
    // NB - correct thresholding behavior requires overlay harmonization after
    // color table harmonization
    overlayHarmonizer.updateDisplay(display, imp);
    positionHarmonizer.updateDisplay(display, imp);
    nameHarmonizer.updateDisplay(display, imp);

    return display;
  }