@Override
public void handle(HttpExchange arg0) throws IOException {
try {
JSONObject request =
(JSONObject) JSONSerializer.toJSON(IOUtils.toString(arg0.getRequestBody()));
String email = request.getString("email");
String key = request.getString("key");
for (int i = 0; i < jobs.size(); i++) {
TnrsJob job = jobs.get(i);
if (job.getRequest().getId().equals(key) && job.getRequest().getEmail().equals(email)) {
JSONObject json = (JSONObject) JSONSerializer.toJSON(job.toJsonString());
json.put("status", "incomplete");
json.put("progress", job.progress());
HandlerHelper.writeResponseRequest(arg0, 200, json.toString(), "application/json");
return;
}
}
if (JobHelper.jobFileExists(baseFolder, email, key)) {
TnrsJob job = JobHelper.readJobInfo(baseFolder, email, key);
HandlerHelper.writeResponseRequest(arg0, 200, job.toJsonString(), "application/json");
} else {
HandlerHelper.writeResponseRequest(
arg0, 500, "No such job exists o it might have expired", "text/plain");
}
} catch (Exception ex) {
log.error(ExceptionUtils.getFullStackTrace(ex));
throw new IOException(ex);
}
}
@Override
public void handle(HttpExchange arg0) throws IOException {
try {
JSONObject json =
(JSONObject) JSONSerializer.toJSON(IOUtils.toString(arg0.getRequestBody()));
JSONObject result = new JSONObject();
String email = json.getString("email");
String key = json.getString("key");
for (int i = 0; i < jobs.size(); i++) {
TnrsJob job = jobs.get(i);
if (job.getRequest().getEmail().equals(email) && job.getRequest().getId().equals(key)) {
if (job.status().equals("failed") || job.status().equals("error")) {
result.put("type", "failed");
} else {
result.put("type", "incomplete");
double progress = job.progress();
if (job.progress() == 100.0) {
progress = 99.0;
}
result.put("progress", progress);
}
HandlerHelper.writeResponseRequest(arg0, 200, result.toString(), "application/json");
return;
}
}
String filename = baseFolder + email.replace("@", "-").replace(".", "-") + "/result" + key;
File results = new File(filename);
if (!results.exists()) {
result.put("type", "non-existent");
} else {
result.put("type", "complete");
TnrsJob job = JobHelper.readJobInfo(baseFolder, email, key);
result.put("job_type", job.getTypeString());
}
HandlerHelper.writeResponseRequest(arg0, 200, result.toString(), "application/json");
return;
} catch (Exception ex) {
log.error(ExceptionUtils.getFullStackTrace(ex));
throw new IOException(ex);
}
}
@Override
public void handle(HttpExchange arg0) throws IOException {
try {
JSONObject json =
(JSONObject) JSONSerializer.toJSON(IOUtils.toString(arg0.getRequestBody()));
String email = json.getString("email");
String key = json.getString("key");
String session_id = json.getString("session_id");
TnrsJob job = JobHelper.readJobInfo(baseFolder, email, key);
if (job.getType() == TnrsJob.PARSING_JOB) {
ParsingResultsFile results = new ParsingResultsFile(job, baseFolder);
results.createFileForDownload(properties.getProperty("org.iplantc.folder.tmp"));
} else {
MatchingResultsFile results = new MatchingResultsFile(job, baseFolder, session_id, false);
results.createFileForDownload(
properties.getProperty("org.iplantc.tnrs.folder.tmp"), json);
results.close();
}
String url = servicesUrl + "getcsv?id=" + key;
HandlerHelper.writeResponseRequest(arg0, 200, url, null);
} catch (Exception ex) {
log.error(ExceptionUtils.getFullStackTrace(ex));
ex.printStackTrace();
}
}
