Esempio n. 1
0
    public void actionPerformed(ActionEvent e) {
      System.out.println("MRMC Variance analysis button clicked. RawStudyCard.varAnalysisListener");
      // Check that .imrmc input file has been read
      // If there is no JTextFilename, then reader scores have not been read
      String name = JTextFilename.getText();
      System.out.println("name=" + name);
      if (name.equals(null) || name.equals("")) {
        JFrame frame = GUI.MRMCobject.getFrame();
        JOptionPane.showMessageDialog(
            frame,
            "Please browse for .imrmc or.csv input file",
            " Error",
            JOptionPane.ERROR_MESSAGE);
        return;
      }

      // Check that a modality has been selected
      if (DBRecordStat.modalityA == GUInterface.NO_MOD
          && DBRecordStat.modalityB == GUInterface.NO_MOD) {
        JFrame frame = GUI.MRMCobject.getFrame();
        JOptionPane.showMessageDialog(
            frame, "You must select at least one modality", "Error", JOptionPane.ERROR_MESSAGE);
        return;
      }

      // Don't allow both modalities to be the same
      if (DBRecordStat.modalityA.compareTo(DBRecordStat.modalityB) == 0) {
        JFrame frame = GUI.MRMCobject.getFrame();
        JOptionPane.showMessageDialog(
            frame, "Modalities must be different", " Error", JOptionPane.ERROR_MESSAGE);
        return;
      }
      // Analyze observerData
      DBRecordStat.DBRecordStatFill(InputFile1, DBRecordStat);
      // Check if variance estimate is negative
      if (DBRecordStat.totalVar > 0) GUI.hasNegative = false;
      else GUI.hasNegative = true;

      if (GUI.hasNegative && FlagMLE == NO_MLE) {
        JFrame frame = GUI.MRMCobject.getFrame();
        int result =
            JOptionPane.showConfirmDialog(
                frame,
                "The total variance estimate is negative.\n"
                    + "Please report to the program developers. This is not expected.\n"
                    + "Do you want to proceed with MLE estimates to avoid negatives?");
        if (JOptionPane.CANCEL_OPTION == result) {
          System.out.println("cancel");
        } else if (JOptionPane.YES_OPTION == result) {
          FlagMLE = USE_MLE;
          DBRecordStat.flagMLE = FlagMLE;
          mleCheckBox.setSelected(true);
          DBRecordStat.totalVar = DBRecordStat.totalVarMLE;
          DBRecordStat.totalVarSingle = DBRecordStat.totalVarMLESingle;
          DBRecordStat.testStat = new StatTest(DBRecordStat);
        } else if (JOptionPane.NO_OPTION == result) {
          FlagMLE = NO_MLE;
        }
      }
      // Update GUI
      DBRecordStat.flagMLE = FlagMLE;
      DBRecordSize.flagMLE = FlagMLE;

      GUI.StatPanel1.setStatPanel();
      GUI.StatPanel1.setTable1();
      DBRecordSize.Nreader = DBRecordStat.Nreader;
      DBRecordSize.Nnormal = DBRecordStat.Nnormal;
      DBRecordSize.Ndisease = DBRecordStat.Ndisease;
      GUI.SizePanel1.NreaderJTextField.setText(Long.toString(DBRecordStat.Nreader));
      GUI.SizePanel1.NnormalJTextField.setText(Long.toString(DBRecordStat.Nnormal));
      GUI.SizePanel1.NdiseaseJTextField.setText(Long.toString(DBRecordStat.Ndisease));
    }
Esempio n. 2
0
    public void actionPerformed(ActionEvent e) {

      GUI.resetGUI();
      if (GUInterface.selectedInput == GUInterface.DescInputChooseMode) {
        JOptionPane.showMessageDialog(
            GUI.MRMCobject.getFrame(),
            "Please choose one kind of input file.",
            "Error",
            JOptionPane.ERROR_MESSAGE);
        return;
      }
      JFileChooser fc = new JFileChooser();
      FileNameExtensionFilter filter =
          new FileNameExtensionFilter("iMRMC Input Files (.imrmc or csv)", "csv", "imrmc");

      if (GUI.inputfileDirectory != null) fc.setCurrentDirectory(GUI.inputfileDirectory);

      fc.setFileFilter(filter);
      int returnVal = fc.showOpenDialog((Component) e.getSource());
      if (returnVal == JFileChooser.CANCEL_OPTION || returnVal == JFileChooser.ERROR_OPTION) return;
      GUI.inputfileDirectory = fc.getCurrentDirectory(); // save last time visit directory
      /*
       *  Get a pointer to the input file and the filename
       */
      File f = fc.getSelectedFile();
      if (f == null) return;
      InputFile1.filename = f.getPath();
      JTextFilename.setText(f.getPath());
      //			GUI.inputfileDirectory = f.getPath();
      /*
       *  Read the .imrmc input file, check for exceptions
       */
      try {
        InputFile1.ReadInputFile(GUI);
      } catch (IOException except) {
        except.printStackTrace();
        JOptionPane.showMessageDialog(
            GUI.MRMCobject.getFrame(), except.getMessage(), "Error", JOptionPane.ERROR_MESSAGE);
        GUI.resetGUI();
        JTextFilename.setText("");
        return;
      }

      /*
       * Compare the experimental design as determined from fields in the header vs. the data
       */
      if (!InputFile1.dataCheckResults.isEmpty()) {
        JOptionPane.showMessageDialog(
            GUI.MRMCobject.getFrame(),
            InputFile1.dataCheckResults,
            "Warning: Input Header Values Do Not Match Actual Values",
            JOptionPane.WARNING_MESSAGE);
      } else {
        JOptionPane.showMessageDialog(
            GUI.MRMCobject.getFrame(),
            "NR = "
                + InputFile1.Nreader
                + " N0 = "
                + InputFile1.Nnormal
                + " N1 = "
                + InputFile1.Ndisease
                + " NM = "
                + InputFile1.Nmodality,
            "Study Info",
            JOptionPane.INFORMATION_MESSAGE);
      }

      /*
       * Initialze modality pulldown menus
       */
      for (String ModalityID : InputFile1.getModalityIDs()) {
        chooseA.addItem(ModalityID);
        chooseB.addItem(ModalityID);
      }
      DBRecordStat.modalityA = GUInterface.NO_MOD;
      DBRecordStat.modalityB = GUInterface.NO_MOD;
    }