/**
* create a soft link where the source file is a data object
*
* @throws Exception
*/
@Test(expected = JargonException.class)
public final void testCreateASoftLinkSourceIsIRODSFile() throws Exception {
String sourceCollectionName = "testCreateASoftLinkSourceIsIRODSFile.txt";
String targetCollectionName = "testCreateASoftLinkSourceNotExistsTarget";
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
String sourceIrodsFile =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + '/' + sourceCollectionName);
String targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + '/' + targetCollectionName);
IRODSFile sourceAsFile =
irodsFileSystem.getIRODSFileFactory(irodsAccount).instanceIRODSFile(sourceIrodsFile);
sourceAsFile.createNewFile();
// create the soft link
MountedCollectionAO mountedCollectionAO =
irodsFileSystem.getIRODSAccessObjectFactory().getMountedCollectionAO(irodsAccount);
mountedCollectionAO.createASoftLink(sourceIrodsFile, targetIrodsCollection);
}
@BeforeClass
public static void setUpBeforeClass() throws Exception {
irodsFileSystem = IRODSFileSystem.instance();
org.irods.jargon.testutils.TestingPropertiesHelper testingPropertiesLoader =
new TestingPropertiesHelper();
testingProperties = testingPropertiesLoader.getTestProperties();
irodsTestSetupUtilities = new org.irods.jargon.testutils.IRODSTestSetupUtilities();
irodsTestSetupUtilities.initializeIrodsScratchDirectory();
irodsTestSetupUtilities.initializeDirectoryForTest(IRODS_TEST_SUBDIR_PATH);
SettableJargonProperties settableJargonProperties =
new SettableJargonProperties(irodsFileSystem.getJargonProperties());
jargonOriginalProperties = settableJargonProperties;
}
@Test(expected = IllegalArgumentException.class)
public void testCreateAndRemoveMountedFileSystemNullResource() throws Exception {
if (!testingPropertiesHelper.isTestFileSystemMount(testingProperties)) {
throw new IllegalArgumentException("thrown to honor contracts");
}
String targetCollectionName = "testCreateAndRemoveMountedFileSystem";
String localMountDir = "testCreateAndRemoveMountedFileSystemLocal";
String localCollectionAbsolutePath =
scratchFileUtils.createAndReturnAbsoluteScratchPath(
IRODS_TEST_SUBDIR_PATH + '/' + localMountDir);
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
String targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + '/' + targetCollectionName);
MountedCollectionAO mountedCollectionAO =
irodsFileSystem.getIRODSAccessObjectFactory().getMountedCollectionAO(irodsAccount);
mountedCollectionAO.createMountedFileSystemCollection(
localCollectionAbsolutePath, targetIrodsCollection, null);
}
@Test(expected = CollectionNotMountedException.class)
public void testCreateAMountedFileSystemPhyPathMissing() throws Exception {
if (!testingPropertiesHelper.isTestFileSystemMount(testingProperties)) {
throw new CollectionNotMountedException("thrown to honor contracts");
}
String targetCollectionName = "testCreateAMountedFileSystemPhyPathMissing";
String localCollectionAbsolutePath = "/i/dont/exist";
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
String targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + '/' + targetCollectionName);
// do an initial unmount
MountedCollectionAO mountedCollectionAO =
irodsFileSystem.getIRODSAccessObjectFactory().getMountedCollectionAO(irodsAccount);
mountedCollectionAO.unmountACollection(
targetIrodsCollection, irodsAccount.getDefaultStorageResource());
mountedCollectionAO.createMountedFileSystemCollection(
localCollectionAbsolutePath,
targetIrodsCollection,
irodsAccount.getDefaultStorageResource());
}
@Test
public void testCreateAMountedFileSystemPhyPathMissingButUnderConfiguredPath() throws Exception {
if (!testingPropertiesHelper.isTestFileSystemMount(testingProperties)) {
return;
}
String targetCollectionName =
"testCreateAMountedFileSystemPhyPathMissingButUnderConfiguredPath";
String localMountDir = "testCreateAMountedFileSystemPhyPathMissingButUnderConfiguredPathLocal";
String localCollectionAbsolutePath =
testingProperties.getProperty(TestingPropertiesHelper.IRODS_REG_BASEDIR)
+ "/"
+ localMountDir;
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
String targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + '/' + targetCollectionName);
// do an initial unmount
MountedCollectionAO mountedCollectionAO =
irodsFileSystem.getIRODSAccessObjectFactory().getMountedCollectionAO(irodsAccount);
mountedCollectionAO.unmountACollection(
targetIrodsCollection, irodsAccount.getDefaultStorageResource());
mountedCollectionAO.createMountedFileSystemCollection(
localCollectionAbsolutePath,
targetIrodsCollection,
irodsAccount.getDefaultStorageResource());
// now get an objstat it should exist
CollectionAndDataObjectListAndSearchAO searchAO =
irodsFileSystem
.getIRODSAccessObjectFactory()
.getCollectionAndDataObjectListAndSearchAO(irodsAccount);
ObjStat objStat = searchAO.retrieveObjectStatForPath(targetIrodsCollection);
Assert.assertEquals(
"did not get spec col in objStat", SpecColType.MOUNTED_COLL, objStat.getSpecColType());
}
/**
* create a soft link where the target file is blank
*
* @throws Exception
*/
@Test(expected = IllegalArgumentException.class)
public final void testCreateASoftLinkTargetIsBlank() throws Exception {
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
MountedCollectionAO mountedCollectionAO =
irodsFileSystem.getIRODSAccessObjectFactory().getMountedCollectionAO(irodsAccount);
mountedCollectionAO.createASoftLink("hello", "");
}
@BeforeClass
public static void setUpBeforeClass() throws Exception {
TestingPropertiesHelper testingPropertiesLoader = new TestingPropertiesHelper();
testingProperties = testingPropertiesLoader.getTestProperties();
scratchFileUtils = new ScratchFileUtils(testingProperties);
scratchFileUtils.clearAndReinitializeScratchDirectory(IRODS_TEST_SUBDIR_PATH);
irodsTestSetupUtilities = new IRODSTestSetupUtilities();
irodsTestSetupUtilities.initializeIrodsScratchDirectory();
irodsTestSetupUtilities.initializeDirectoryForTest(IRODS_TEST_SUBDIR_PATH);
irodsFileSystem = IRODSFileSystem.instance();
}
@Test
public void testHandleNoObjStatUnderRootOrHomeByLookingForPublicAndHome() throws Exception {
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
SettableJargonProperties props =
new SettableJargonProperties(irodsFileSystem.getJargonProperties());
props.setDefaultToPublicIfNothingUnderRootWhenListing(true);
irodsFileSystem.getIrodsSession().setJargonProperties(props);
CollectionAndDataObjectListAndSearchAO collectionAndDataObjectListAndSearchAO =
irodsFileSystem
.getIRODSAccessObjectFactory()
.getCollectionAndDataObjectListAndSearchAO(irodsAccount);
CollectionListingUtils listingUtils =
new CollectionListingUtils(collectionAndDataObjectListAndSearchAO);
String path = "/";
ObjStat objStat = listingUtils.handleNoObjStatUnderRootOrHomeByLookingForPublicAndHome(path);
Assert.assertNotNull(objStat);
Assert.assertTrue(objStat.isStandInGeneratedObjStat());
Assert.assertEquals(path, objStat.getAbsolutePath());
}
@Test(expected = IllegalArgumentException.class)
public void testCreateAndRemoveMountedFileSystemNullTarget() throws Exception {
if (!testingPropertiesHelper.isTestFileSystemMount(testingProperties)) {
throw new IllegalArgumentException("thrown to honor contracts");
}
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
MountedCollectionAO mountedCollectionAO =
irodsFileSystem.getIRODSAccessObjectFactory().getMountedCollectionAO(irodsAccount);
mountedCollectionAO.createMountedFileSystemCollection("source", null, "resc");
}
/**
* Unmount a soft link that does not exist
*
* @throws Exception
*/
@Test
public final void testUnmountSoftLinkNotExists() throws Exception {
String targetCollectionName = "testUnmountSoftLinkNotExists";
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
String targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + '/' + targetCollectionName);
// do an initial unmount
MountedCollectionAO mountedCollectionAO =
irodsFileSystem.getIRODSAccessObjectFactory().getMountedCollectionAO(irodsAccount);
boolean success = mountedCollectionAO.unmountACollection(targetIrodsCollection, "");
Assert.assertFalse("should get no success", success);
}
@Test(expected = CollectionNotMountedException.class)
public void testCreateMountedFileSystemTwice() throws Exception {
if (!testingPropertiesHelper.isTestFileSystemMount(testingProperties)) {
throw new CollectionNotMountedException("thrown to honor contracts");
}
String targetCollectionName = "testCreateMountedFileSystemTwice";
String localMountDir = "testCreateMountedFileSystemTwiceLocal";
String localCollectionAbsolutePath =
scratchFileUtils.createAndReturnAbsoluteScratchPath(
IRODS_TEST_SUBDIR_PATH + '/' + localMountDir);
FileGenerator.generateManyFilesInParentCollectionByAbsolutePath(
localCollectionAbsolutePath, "testCreateMountedFileSystemTwice", ".txt", 10, 1, 2);
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
String targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + '/' + targetCollectionName);
// do an initial unmount
MountedCollectionAO mountedCollectionAO =
irodsFileSystem.getIRODSAccessObjectFactory().getMountedCollectionAO(irodsAccount);
mountedCollectionAO.unmountACollection(
targetIrodsCollection, irodsAccount.getDefaultStorageResource());
mountedCollectionAO.createMountedFileSystemCollection(
localCollectionAbsolutePath,
targetIrodsCollection,
irodsAccount.getDefaultStorageResource());
mountedCollectionAO.createMountedFileSystemCollection(
localCollectionAbsolutePath,
targetIrodsCollection,
irodsAccount.getDefaultStorageResource());
// no errors means success. will test further in
// listing methods
}
@Test(expected = IllegalArgumentException.class)
public void testCreateAndRemoveMountedFileSystemBlankSource() throws Exception {
if (!testingPropertiesHelper.isTestFileSystemMount(testingProperties)) {
throw new IllegalArgumentException("thrown to honor contracts");
}
String targetCollectionName = "testCreateAndRemoveMountedFileSystem";
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
String targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + '/' + targetCollectionName);
MountedCollectionAO mountedCollectionAO =
irodsFileSystem.getIRODSAccessObjectFactory().getMountedCollectionAO(irodsAccount);
mountedCollectionAO.createMountedFileSystemCollection("", targetIrodsCollection, "");
}
@Test
public void testCreateAndRemoveMountedFileSystem() throws Exception {
if (!testingPropertiesHelper.isTestFileSystemMount(testingProperties)) {
return;
}
String targetCollectionName = "testCreateAndRemoveMountedFileSystem";
String localMountDir = "testCreateAndRemoveMountedFileSystemLocal";
String localCollectionAbsolutePath =
testingProperties.getProperty(TestingPropertiesHelper.IRODS_REG_BASEDIR)
+ "/"
+ localMountDir;
File localFile = new File(localCollectionAbsolutePath);
localFile.mkdirs();
FileGenerator.generateManyFilesInParentCollectionByAbsolutePath(
localCollectionAbsolutePath, "testCreateAndRemoveMountedFileSystem", ".txt", 10, 1, 2);
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
String targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + '/' + targetCollectionName);
// do an initial unmount
MountedCollectionAO mountedCollectionAO =
irodsFileSystem.getIRODSAccessObjectFactory().getMountedCollectionAO(irodsAccount);
mountedCollectionAO.unmountACollection(
targetIrodsCollection, irodsAccount.getDefaultStorageResource());
mountedCollectionAO.createMountedFileSystemCollection(
localCollectionAbsolutePath,
targetIrodsCollection,
irodsAccount.getDefaultStorageResource());
}
/**
* Create a soft link to an iRODS collection in nominal mode, target does not exist and will be
* created
*
* @throws Exception
*/
@Test
public final void testCreateASoftLink() throws Exception {
String sourceCollectionName = "testCreateASoftLinkSource";
String targetCollectionName = "testCreateASoftLinkTarget";
String subfileName = "testCreateASoftLink.txt";
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
String sourceIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + '/' + sourceCollectionName);
String targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + '/' + targetCollectionName);
// do an initial unmount
MountedCollectionAO mountedCollectionAO =
irodsFileSystem.getIRODSAccessObjectFactory().getMountedCollectionAO(irodsAccount);
mountedCollectionAO.unmountACollection(
targetIrodsCollection, irodsAccount.getDefaultStorageResource());
// set up source collection
IRODSFile sourceFile =
irodsFileSystem.getIRODSFileFactory(irodsAccount).instanceIRODSFile(sourceIrodsCollection);
sourceFile.mkdirs();
IRODSFile subFile =
irodsFileSystem
.getIRODSFileFactory(irodsAccount)
.instanceIRODSFile(sourceIrodsCollection, subfileName);
subFile.createNewFile();
// add a subfile to this collection
// create the soft link
mountedCollectionAO.createASoftLink(sourceIrodsCollection, targetIrodsCollection);
IRODSFile mountedCollectionTargetFile =
irodsFileSystem.getIRODSFileFactory(irodsAccount).instanceIRODSFile(targetIrodsCollection);
Assert.assertTrue("target collection does not exist", mountedCollectionTargetFile.exists());
String softLinkedSourceFileName =
mountedCollectionTargetFile.getAbsolutePath() + "/" + subFile.getName();
CollectionAndDataObjectListAndSearchAO listAndSearchAO =
irodsFileSystem
.getIRODSAccessObjectFactory()
.getCollectionAndDataObjectListAndSearchAO(irodsAccount);
ObjStat statForSoftLinkedFile =
listAndSearchAO.retrieveObjectStatForPath(softLinkedSourceFileName);
Assert.assertEquals(
"did not set the objPath",
targetIrodsCollection,
statForSoftLinkedFile.getCollectionPath());
Assert.assertEquals(
"did not identify as a linked coll",
ObjStat.SpecColType.LINKED_COLL,
statForSoftLinkedFile.getSpecColType());
Assert.assertTrue(
"did not get the soft linked file",
statForSoftLinkedFile.getObjectType() == ObjectType.DATA_OBJECT);
}
@AfterClass
public static void tearDownAfterClass() throws Exception {
irodsFileSystem.closeAndEatExceptions();
}
@Before
public void before() throws Exception {
// be sure that normal parallel stuff is set up
irodsFileSystem.getIrodsSession().setJargonProperties(jargonOriginalProperties);
}
