/**
* writeData Write a DataItem on the node pointed by path.
*
* @param dsData DataItem item to be written
* @param paPath path to set datas in current file (can be absolute or local)
* @note if path don't exists it will be automatically created
*/
public void writeData(DataItem dsData, PathNexus paPath) throws NexusException {
if (dsData.getData() instanceof PathNexus) {
// Write link
writeLink((PathNexus) dsData.getData(), paPath);
// Return to document root
closeAll();
} else {
// Create or open DataItem
boolean bNeedDataCheck = createDataItem(dsData, paPath, true);
// Check data compatiblity if needed
if (bNeedDataCheck) {
checkDataMatch(dsData);
}
// Write data
putData(dsData);
// Write attributes
putAttr(dsData);
// Return to document root
closeAll();
}
}
/**
* convertArray Returns an array of values corresponding to writable type by the HDF library. It
* converts automatically the data type into its corresponding type. i.e: if dsData is a boolean
* array it converts it into byte array, if it's a byte array it converts it into a bool array...
*
* @param dsData the data to be converted into
* @throws NexusException
* @note: conversions are the following: bool => byte, byte => bool
*/
protected Object convertArray(DataItem dsData) throws NexusException {
String sClassName = dsData.getData().getClass().getName();
sClassName = sClassName.substring(sClassName.lastIndexOf('[') + 1);
Object oOutput;
int[] iShape = detectArrayShape(dsData.getData());
// Converting boolean to byte because Nexus API don't accept it
if (sClassName.startsWith("Ljava.lang.Boolean") || sClassName.equals("Z"))
oOutput = java.lang.reflect.Array.newInstance(Byte.TYPE, iShape);
else if (sClassName.startsWith("Ljava.lang.Byte") || sClassName.equals("B"))
oOutput = java.lang.reflect.Array.newInstance(Boolean.TYPE, iShape);
/*
* ******** Warning: jnexus API doesn't support NX_INT64 for writing
* those lines convert NX_INT64 into NX_FLOAT64, so long to double //
* Converting long as double because the JAVA Nexus API uses C++ native
* methods whom don't support integer 64 bit else if(
* sClassName.startsWith("Ljava.lang.Long") || sClassName.equals("J") )
* oOutput = java.lang.reflect.Array.newInstance( Double.class,
* dsData.getSize());
*/
// Nothing to do
else throw new NexusException("No data conversion requested!");
return convertArray(oOutput, dsData.getData());
}
/**
* putData Put the item value in the currently opened DataItem
*
* @param dsData is a DataItem item (properly initiated), having dimensions, type and size
* corresponding to opened DataItem
*/
protected void putData(DataItem dsData) throws NexusException {
// Ensures the DataItem has an array value
dsData.arrayify();
// Getting data from DataItem
Object iData = dsData.getData();
// Converting from string to byte[]
if (dsData.getType() == NexusFile.NX_CHAR) iData = ((String) iData).getBytes();
// Converting from boolean[] to byte[]
else if (dsData.getType() == NexusFile.NX_BOOLEAN) iData = convertArray(dsData);
/* ******** Warning: jnexus API doesn't support NX_INT64 for writing
* those lines convert NX_INT64 into NX_FLOAT64, so long to double
// Converting from long[] to double[]
else if( dsData.getType() == NexusFile.NX_INT64 )
{
iData = convertArray(dsData);
dsData.setType(NexusFile.NX_FLOAT64);
}
*/
// Putting data into opened DataItem
getNexusFile().putdata(iData);
}
// 按照时间，sizeWindow和stepWindow将数据分成项集，再调用Itemset2File写入文件
public static String[] movingdivide(DataItems datainput, TaskElement task, boolean FP)
throws IOException {
int sizeWindow = (int) ((ParamsSM) task.getMiningParams()).getSizeWindow() * 1000; // seconds
int stepWindow = (int) ((ParamsSM) task.getMiningParams()).getStepWindow() * 1000; // seconds
int len = datainput.getLength();
List<Date> time = datainput.getTime();
List<String> data = datainput.getData();
List<String> DataSets = new ArrayList<String>();
Date win_start_time = time.get(0);
Date win_end_time = getDateAfter(win_start_time, sizeWindow);
Date win_start_next = getDateAfter(win_start_time, stepWindow);
int ind_next = -1;
StringBuilder sb = new StringBuilder();
int i = 0;
do {
DataItem item = datainput.getElementAt(i);
i++;
Date date = item.getTime();
String val = item.getData();
if (!date.before(win_start_time) && !date.after(win_end_time)) {
if (sb.length() != 0) sb.append(" ");
sb.append(val + " -1");
if (!date.before(win_start_next) && ind_next == -1) ind_next = i - 1;
} else {
sb.append(" -2");
DataSets.add(sb.toString());
sb = new StringBuilder();
if (ind_next == -1) {
if (!date.before(getDateAfter(win_end_time, stepWindow))) {
win_start_time = date;
if (sb.length() != 0) sb.append(" ");
sb.append(val + " -1");
} else {
win_start_time = win_start_next; // getDateAfter(win_start_time, stepWindow);
if (sb.length() != 0) sb.append(" ");
sb.append(val + " -1");
}
} else {
i = ind_next;
ind_next = -1;
win_start_time = win_start_next;
}
win_end_time = getDateAfter(win_start_time, sizeWindow);
win_start_next = getDateAfter(win_start_time, stepWindow);
}
} while (i < len);
sb.append(" -2");
DataSets.add(sb.toString());
return DataSets.toArray(new String[0]);
}
private DataMap create(DataItem dataItem) {
if ((dataItem.getData() == null) && (dataItem.getAssets().size() > 0))
throw new IllegalArgumentException("Cannot create DataMapItem from an empty DataItem.");
if (dataItem.getData() == null) return new DataMap();
try {
byte[] data = dataItem.getData();
DataMap dataMap = DataMap.fromByteArray(data);
if (dataItem.getAssets() != null) {
Iterator<String> iterator = dataItem.getAssets().keySet().iterator();
while (iterator.hasNext()) {
String key = (String) iterator.next();
DataItemAsset dataItemAsset = (DataItemAsset) dataItem.getAssets().get(key);
String[] pathArray = key.split("_@_");
Log.e("spencer", "key = " + key + " pathArray = " + Arrays.toString(pathArray));
DataMap localDataMap2 = dataMap;
for (int i = 0; i < pathArray.length - 1; i++) {
String str2 = pathArray[(i + 1)];
String[] indexArray = str2.split("_#_");
if (indexArray.length == 1) {
localDataMap2 = localDataMap2.getDataMap(pathArray[i]);
} else {
int j = Integer.parseInt(indexArray[0]);
localDataMap2 = (DataMap) localDataMap2.getDataMapArrayList(pathArray[i]).get(j);
pathArray[(i + 1)] = indexArray[1];
}
}
Log.e(
"spencer",
"putAsset -> " + pathArray[(pathArray.length - 1)] + " " + dataItemAsset.getId());
localDataMap2.putAsset(
pathArray[(pathArray.length - 1)], Asset.createFromRef(dataItemAsset.getId()));
}
}
return dataMap;
} catch (Exception e) {
Log.e("DataMapItem", "parse a DataItem failed.", e);
throw new IllegalStateException("parse a DataItem failed.", e);
}
}
/**
* putAttr Write the attribute in the currently opened DataItem
*
* @param sAttrName name of the attribute
* @param tData array of values for the attribute
*/
@SuppressWarnings("unchecked")
protected <type> void putAttr(String sAttrName, type tData) throws NexusException {
Object tArrayData;
if (!(tData instanceof String) && !tData.getClass().isArray()) {
tArrayData = (type[]) java.lang.reflect.Array.newInstance(tData.getClass(), 1);
java.lang.reflect.Array.set(tArrayData, 0, tData);
} else tArrayData = tData;
// Changing the array into a DataItem object to apply conversion methods if needed
Object iData;
DataItem dsData = new DataItem(tArrayData);
// Converting from string to byte[]
if (dsData.getType() == NexusFile.NX_CHAR) iData = ((String) dsData.getData()).getBytes();
// Converting from boolean[] to byte[]
else if (dsData.getType() == NexusFile.NX_BOOLEAN) iData = convertArray(dsData);
/* ******** Warning: jnexus API doesn't support NX_INT64 for writing
* those lines convert NX_INT64 into NX_FLOAT64, so long to double
// Converting from long[] to double[]
else if( dsData.getType() == NexusFile.NX_INT64 )
{
iData = convertArray(dsData);
dsData.setType(NexusFile.NX_FLOAT64);
}
*/
// Setting datas as they are
else iData = dsData.getData();
// Putting datas into the attribute
getNexusFile().putattr(sAttrName, iData, dsData.getType());
// Free ressources
iData = null;
}
protected void publishFromLocalQueue() throws InterruptedException {
try {
for (; ; ) {
synchronized (dataQueue) {
if (dataQueue.isEmpty()) {
dataQueue.wait(1000);
// if the queue stays empty for more then one second, disconnect and
// wait offline
if (dataQueue.isEmpty()) {
System.out.println("disconnected for inactivity");
disconnect();
dataQueue.wait();
waitForConnection();
}
}
}
DataItem item = dataQueue.peek();
BasicProperties messageProperties =
new BasicProperties.Builder()
.messageId(Long.toString(item.getId()))
.deliveryMode(2)
.build();
long deliveryTag = channel.getNextPublishSeqNo();
channel.basicPublish("", Constants.queue, messageProperties, item.getData().getBytes());
// only after successfully publishing, move the item to the
// container of pending items. They will be removed from it only
// upon the
// reception of the confirms from the broker.
synchronized (pendingItems) {
pendingItems.put(deliveryTag, item);
}
dataQueue.remove();
if (Thread.interrupted()) {
throw new InterruptedException();
}
}
} catch (IOException e) {
// do nothing: the connection will be closed and then retried
}
}
