public void updateStatsSubmitUI() {
File explist = new File(m_curSQExp + "/EXPLIST");
File enterSQ = new File(m_curSQExp + "/tmpstudy/enterSQ");
Map<String, String> titleToIdMap = getTitleToIdMap(explist, enterSQ);
String curSampleDir = getDataDir(m_autodir);
File acqlist = new File(m_archiveDir + "/" + curSampleDir + "/dirinfo/macdir/ACQlist");
Map<String, String> expStats = getExpStats(acqlist);
Set<String> titles = titleToIdMap.keySet();
for (String title : titles) {
String node = titleToIdMap.get(title);
String status = expStats.get(title);
if (status == null) {
status = SQ_READY;
} else if (status.equals(SQ_ACTIVE)) {
status = SQ_EXECUTING;
}
m_studyQueue.processCommand(SET + " " + node + " " + ATTR_STATUS + " " + status);
}
// Set the parent title to show the current sample number
// m_studyQueue.processCommand(SET + " tmpstudy " + ATTR_TITLE
// + " \"Sample " + m_sampleNumber + "\"");
// m_studyQueue.processCommand(SET + " tmpstudy " + ATTR_TOOLTEXT
// + " \"\"");
}
private SQNode getNodeInfoFromSQ(String nodeId) {
SQNode nodeInfo = null;
ProtocolBuilder mgr = m_studyQueue.getMgr();
VElement velem = mgr.getElement(nodeId);
if (velem != null) {
nodeInfo = new SQNode();
for (String attr : SQNode.getStandardAttributes()) {
String value = mgr.getAttribute(velem, attr);
nodeInfo.setAttr(attr, value);
}
}
// String when = "";
// String[] whenEnums = {"_day", "_night"};
// for (String w : whenEnums) {
// if (psLabel.contains(w)) {
// when = w;
// psLabel = psLabel.replace(w, "");
// }
// if (title.contains(w)) {
// when = w;
// title = title.replace(w, "");
// }
// }
return nodeInfo;
}
private List<String> getNodeIdsFromSQ(int nodeType) {
ProtocolBuilder mgr = m_studyQueue.getMgr();
ArrayList<VElement> elementList;
elementList = mgr.getElements(null, nodeType);
ArrayList<String> ids = new ArrayList<String>();
for (VElement elem : elementList) {
ids.add(elem.getAttribute(ProtocolBuilder.ATTR_ID));
}
return ids;
}
private String removeSampleInfoNode(List<String> ids) {
String id = null;
if (ids.size() > 0) {
ProtocolBuilder mgr = m_studyQueue.getMgr();
VElement vnode = mgr.getElement(ids.get(0));
String title = mgr.getAttribute(vnode, ATTR_TITLE);
if (title.contains("SampleInfo")) {
id = ids.remove(0);
}
}
return id;
}
private boolean updateNodeInSQ(String id, SQNode srcNode, List<String> changed) {
boolean ok = false;
ProtocolBuilder mgr = m_studyQueue.getMgr();
VElement elem = mgr.getElement(id);
if (elem != null) {
for (String attr : changed) {
String value = srcNode.getAttr(attr);
mgr.setAttribute(elem, attr, value);
}
ok = true;
}
return ok;
}
public void updateStatsBgstudyUI() {
Messages.postDebug("SQUpdater", "updateStatsBgstudyUI");
List<String> nodes = getNodeIdsFromSQ(ProtocolBuilder.ACTIONS);
Map<String, String> expStats = getExpStats(new File(m_dataWatchPath));
File f = new File(m_dataDir + "/dirinfo/parlib/parliblist");
Map<String, String> fidNames = getFidNames(f);
// boolean done = nodes.size() > 0;
ProtocolBuilder mgr = m_studyQueue.getMgr();
for (String node : nodes) {
VElement vnode = mgr.getElement(node);
String title = mgr.getAttribute(vnode, ATTR_TITLE);
String stat = getValueFromTitle(title, expStats);
if (stat != null) {
mgr.setAttribute(vnode, ATTR_STATUS, stat);
if (stat.equals(SQ_COMPLETED)) {
String fidname = getValueFromTitle(title, fidNames);
if (fidname != null) {
mgr.setAttribute(vnode, ATTR_TITLE, fidname);
}
}
}
// // See if this node still may change
// stat = m_studyQueue.getAttribute(node, ATTR_STATUS);
// if (stat != null) {
// if (stat.equalsIgnoreCase(READY)
// || stat.equalsIgnoreCase(QUEUED)
// || stat.equalsIgnoreCase(EXECUTING)
// )
// {
// done = false;
// }
// }
}
// // Clean up if we're done
// // Keep getting false positives on this
// // ... check how many updates we've done?
// if (done) {
// Util.sendToVnmr("SQWatch('off')");
// Util.sendToVnmr("xmhaha('refreshSQ')");
// }
}
public void updateStatsMoreUI() {
List<String> stats = null;
String curSampleDir = getDataDir(m_autodir);
File acqlist = new File(m_archiveDir + "/" + curSampleDir + "/dirinfo/macdir/ACQlist");
stats = getStatList(acqlist);
File enterSQ = new File(m_curSQExp + "/tmpstudy/enterSQ");
List<String> nodes = getNodeList(enterSQ);
int len = nodes.size();
int statsLen = stats.size();
for (int i = 0; i < len; i++) {
String node = nodes.get(i);
String status = i < statsLen ? stats.get(i) : SQ_READY;
if (status.equals(SQ_ACTIVE)) {
status = SQ_EXECUTING;
}
m_studyQueue.processCommand(SET + " " + node + " " + ATTR_STATUS + " " + status);
}
}
private NamedNodeMap getNodeAttributesFromSQ(String nodeId) {
ProtocolBuilder mgr = m_studyQueue.getMgr();
VElement velem = mgr.getElement(nodeId);
NamedNodeMap attrs = velem.getAttributes();
return attrs;
}