@SuppressWarnings("unchecked")
private void setUpForNotes(Sample sample) {
noteIdToIndicatorMap = new HashMap<String, String>();
List<Result> results = resultDAO.getResultsForSample(sample);
History searchHistory = new History();
searchHistory.setReferenceTable(NOTE_TABLE_ID);
historyList = new ArrayList<History>();
Note searchNote = new Note();
searchNote.setReferenceTableId(RESULT_TABLE_ID);
for (Result result : results) {
searchNote.setReferenceId(result.getId());
List<Note> notes = noteDAO.getAllNotesByRefIdRefTable(searchNote);
for (Note note : notes) {
searchHistory.setReferenceId(note.getId());
noteIdToIndicatorMap.put(
note.getId(), TestService.getLocalizedTestName(result.getAnalysis().getTest()));
historyList.addAll(auditTrailDAO.getHistoryByRefIdAndRefTableId(searchHistory));
}
}
newValueMap = new HashMap<String, String>();
}
private void addResultSets(Analysis analysis, Result result) {
Sample sample = analysis.getSampleItem().getSample();
Patient patient = sampleHumanDAO.getPatientForSample(sample);
List<DocumentTrack> documents =
documentTrackDAO.getByTypeRecordAndTable(RESULT_REPORT_ID, RESULT_TABLE_ID, result.getId());
if (documents.isEmpty()) {
newResultSet.add(new ResultSet(result, null, null, patient, sample, null, false));
} else {
modifiedResultSet.add(new ResultSet(result, null, null, patient, sample, null, false));
}
}
@Override
protected ActionForward performAction(
ActionMapping mapping,
ActionForm form,
HttpServletRequest request,
HttpServletResponse response)
throws Exception {
String forward = FWD_SUCCESS;
List<IResultUpdate> updaters = ValidationUpdateRegister.getRegisteredUpdaters();
boolean areListeners = updaters != null && !updaters.isEmpty();
request.getSession().setAttribute(SAVE_DISABLED, "true");
BaseActionForm dynaForm = (BaseActionForm) form;
ResultValidationPaging paging = new ResultValidationPaging();
paging.updatePagedResults(request, dynaForm);
List<AnalysisItem> resultItemList = paging.getResults(request);
String testSectionName = (String) dynaForm.get("testSection");
String testName = (String) dynaForm.get("testName");
setRequestType(testSectionName);
ActionMessages errors = validateModifiedItems(resultItemList);
if (errors.size() > 0) {
saveErrors(request, errors);
request.setAttribute(Globals.ERROR_KEY, errors);
return mapping.findForward(FWD_VALIDATION_ERROR);
}
createSystemUser();
setSampleFinishedStatuses();
noteUpdateList = new ArrayList<Note>();
resultUpdateList = new ArrayList<Result>();
analysisUpdateList = new ArrayList<Analysis>();
modifiedResultSet = new ArrayList<ResultSet>();
newResultSet = new ArrayList<ResultSet>();
deletableList = new ArrayList<Result>();
if (testSectionName.equals("serology")) {
createUpdateElisaList(resultItemList);
} else {
createUpdateList(resultItemList, areListeners);
}
Transaction tx = HibernateUtil.getSession().beginTransaction();
try {
ResultSaveService.removeDeletedResultsInTransaction(deletableList, currentUserId);
// update analysis
for (Analysis analysis : analysisUpdateList) {
analysisDAO.updateData(analysis);
}
for (Result result : resultUpdateList) {
if (result.getId() != null) {
resultDAO.updateData(result);
} else {
resultDAO.insertData(result);
}
}
checkIfSamplesFinished(resultItemList);
// update finished samples
for (Sample sample : sampleUpdateList) {
sampleDAO.updateData(sample);
}
// create or update notes
for (Note note : noteUpdateList) {
if (note != null) {
if (note.getId() == null) {
noteDAO.insertData(note);
} else {
noteDAO.updateData(note);
}
}
}
for (IResultUpdate updater : updaters) {
updater.transactionalUpdate(this);
}
tx.commit();
} catch (LIMSRuntimeException lre) {
tx.rollback();
}
for (IResultUpdate updater : updaters) {
updater.postTransactionalCommitUpdate(this);
}
if (isBlankOrNull(testSectionName)) {
return mapping.findForward(forward);
} else {
Map<String, String> params = new HashMap<String, String>();
params.put("type", testSectionName);
params.put("test", testName);
params.put("forward", forward);
return getForwardWithParameters(mapping.findForward(forward), params);
}
}
private ReferralItem getReferralItem(Referral referral) {
boolean allReferralResultsHaveResults = true;
List<ReferralResult> referralResults =
referralResultDAO.getReferralResultsForReferral(referral.getId());
for (ReferralResult referralResult : referralResults) {
if (referralResult.getResult() == null
|| GenericValidator.isBlankOrNull(referralResult.getResult().getValue())) {
allReferralResultsHaveResults = false;
break;
}
}
if (allReferralResultsHaveResults) {
return null;
}
ReferralItem referralItem = new ReferralItem();
AnalysisService analysisService = new AnalysisService(referral.getAnalysis());
referralItem.setCanceled(false);
referralItem.setReferredResultType("N");
referralItem.setAccessionNumber(analysisService.getOrderAccessionNumber());
TypeOfSample typeOfSample = analysisService.getTypeOfSample();
referralItem.setSampleType(typeOfSample.getLocalizedName());
referralItem.setReferringTestName(
TestService.getUserLocalizedTestName(analysisService.getAnalysis().getTest()));
List<Result> resultList = analysisService.getResults();
String resultString = "";
if (!resultList.isEmpty()) {
Result result = resultList.get(0);
resultString = getAppropriateResultValue(resultList);
referralItem.setInLabResultId(result.getId());
}
referralItem.setReferralId(referral.getId());
if (!referralResults.isEmpty()) {
referralResults = setReferralItemForNextTest(referralItem, referralResults);
if (!referralResults.isEmpty()) {
referralItem.setAdditionalTests(getAdditionalReferralTests(referralResults));
}
}
referralItem.setReferralResults(resultString);
referralItem.setReferralDate(DateUtil.convertTimestampToStringDate(referral.getRequestDate()));
referralItem.setReferredSendDate(getSendDateOrDefault(referral));
referralItem.setReferrer(referral.getRequesterName());
referralItem.setReferralReasonId(referral.getReferralReasonId());
referralItem.setTestSelectionList(getTestsForTypeOfSample(typeOfSample));
referralItem.setReferralId(referral.getId());
if (referral.getOrganization() != null) {
referralItem.setReferredInstituteId(referral.getOrganization().getId());
}
String notes = analysisService.getNotesAsString(true, true, "<br/>", false);
if (notes != null) {
referralItem.setPastNotes(notes);
}
return referralItem;
}
