// create from a dataset
public VariableBean(Variable vs) {
this.vs = vs;
// vs = (v instanceof VariableEnhanced) ? (VariableEnhanced) v : new VariableStandardized( v);
setName(vs.getShortName());
setDescription(vs.getDescription());
setUnits(vs.getUnitsString());
setDataType(vs.getDataType().toString());
// Attribute csAtt = vs.findAttribute("_coordSystems");
// if (csAtt != null)
// setCoordSys( csAtt.getStringValue());
// collect dimensions
StringBuilder lens = new StringBuilder();
StringBuilder names = new StringBuilder();
java.util.List dims = vs.getDimensions();
for (int j = 0; j < dims.size(); j++) {
ucar.nc2.Dimension dim = (ucar.nc2.Dimension) dims.get(j);
if (j > 0) {
lens.append(",");
names.append(",");
}
String name = dim.isShared() ? dim.getName() : "anon";
names.append(name);
lens.append(dim.getLength());
}
setDimensions(names.toString());
setShape(lens.toString());
}
private int findDimension(Dimension want) {
java.util.List dims = vs.getDimensions();
for (int i = 0; i < dims.size(); i++) {
Dimension d = (Dimension) dims.get(i);
if (d.equals(want)) return i;
}
return -1;
}
private int setDataDescriptors(java.util.List<DdsBean> beanList, DataDescriptor dds, int seqno) {
for (DataDescriptor key : dds.getSubKeys()) {
beanList.add(new DdsBean(key, seqno++));
if (key.getSubKeys() != null) seqno = setDataDescriptors(beanList, key, seqno);
}
return seqno;
}
public void setBufrFile(RandomAccessFile raf) throws IOException {
this.raf = raf;
java.util.List<MessageBean> beanList = new ArrayList<MessageBean>();
scan = new MessageScanner(raf);
while (scan.hasNext()) {
Message m = scan.next();
if (m == null) continue;
beanList.add(new MessageBean(m));
}
messageTable.setBeans(beanList);
obsTable.setBeans(new ArrayList());
ddsTable.setBeans(new ArrayList());
}
private void setObs(Message m) {
java.util.List<ObsBean> beanList = new ArrayList<ObsBean>();
try {
NetcdfDataset ncd = getBufrMessageAsDataset(m);
Variable v = ncd.findVariable(BufrIosp.obsRecord);
if ((v != null) && (v instanceof Structure)) {
Structure obs = (Structure) v;
StructureDataIterator iter = obs.getStructureIterator();
while (iter.hasNext()) {
beanList.add(new ObsBean(obs, iter.next()));
}
}
} catch (Exception ex) {
JOptionPane.showMessageDialog(BufrMessageViewer.this, ex.getMessage());
ex.printStackTrace();
}
obsTable.setBeans(beanList);
}
public VariableBean(VariableEnhanced v) {
this.ve = v;
setName(v.getFullName());
setDescription(v.getDescription());
setUnits(v.getUnitsString());
// collect dimensions
StringBuilder lens = new StringBuilder();
StringBuilder names = new StringBuilder();
java.util.List dims = v.getDimensions();
for (int j = 0; j < dims.size(); j++) {
ucar.nc2.Dimension dim = (ucar.nc2.Dimension) dims.get(j);
if (j > 0) {
lens.append(",");
names.append(",");
}
String name = dim.isShared() ? dim.getShortName() : "anon";
names.append(name);
lens.append(dim.getLength());
}
setDims(names.toString());
setShape(lens.toString());
StringBuilder buff = new StringBuilder();
List<CoordinateSystem> csList = v.getCoordinateSystems();
for (CoordinateSystem cs : csList) {
if (firstCoordSys == null) firstCoordSys = cs;
else buff.append("; ");
buff.append(cs.getName());
Formatter gridBuff = new Formatter();
if (GridCoordSys.isGridCoordSys(gridBuff, cs, v)) {
addDataType("grid");
} /* else if (PointDatasetDefaultHandler.isPointFeatureDataset(ds)) {
addDataType("point");
} */
}
setCoordSys(buff.toString());
}
private InvDatasetImpl openResolver(
String urlString, ucar.nc2.util.CancelTask task, Result result) {
InvCatalogFactory catFactory = new InvCatalogFactory("", false);
InvCatalogImpl catalog = catFactory.readXML(urlString);
if (catalog == null) {
result.errLog.format("Couldnt open Resolver %s %n ", urlString);
return null;
}
StringBuilder buff = new StringBuilder();
if (!catalog.check(buff)) {
result.errLog.format("Invalid catalog from Resolver <%s>%n%s%n", urlString, buff.toString());
result.fatalError = true;
return null;
}
InvDataset top = catalog.getDataset();
if (top.hasAccess()) return (InvDatasetImpl) top;
else {
java.util.List datasets = top.getDatasets();
return (InvDatasetImpl) datasets.get(0);
}
}
public AxisBean(CoordinateAxis v) {
this.axis = v;
setName(v.getFullName());
setCoordVar(v.isCoordinateVariable());
setDescription(v.getDescription());
setUnits(v.getUnitsString());
// collect dimensions
StringBuilder lens = new StringBuilder();
StringBuilder names = new StringBuilder();
java.util.List dims = v.getDimensions();
for (int j = 0; j < dims.size(); j++) {
ucar.nc2.Dimension dim = (ucar.nc2.Dimension) dims.get(j);
if (j > 0) {
lens.append(",");
names.append(",");
}
String name = dim.isShared() ? dim.getShortName() : "anon";
names.append(name);
lens.append(dim.getLength());
}
setDims(names.toString());
setShape(lens.toString());
AxisType at = v.getAxisType();
if (at != null) setAxisType(at.toString());
String p = v.getPositive();
if (p != null) setPositive(p);
if (v instanceof CoordinateAxis1D) {
CoordinateAxis1D v1 = (CoordinateAxis1D) v;
if (v1.isRegular()) setRegular(Double.toString(v1.getIncrement()));
}
isLayer = (null != axis.findAttribute(_Coordinate.ZisLayer));
isInterval = axis.isInterval();
}