private void writeStationData(List<ucar.unidata.geoloc.Station> stnList) throws IOException {
this.stnList = stnList;
int nstns = stnList.size();
stationMap = new HashMap<String, StationTracker>(2 * nstns);
if (debug) System.out.println("stationMap created");
// now write the station data
ArrayDouble.D1 latArray = new ArrayDouble.D1(nstns);
ArrayDouble.D1 lonArray = new ArrayDouble.D1(nstns);
ArrayDouble.D1 altArray = new ArrayDouble.D1(nstns);
ArrayObject.D1 idArray = new ArrayObject.D1(String.class, nstns);
ArrayObject.D1 descArray = new ArrayObject.D1(String.class, nstns);
ArrayObject.D1 wmoArray = new ArrayObject.D1(String.class, nstns);
for (int i = 0; i < stnList.size(); i++) {
ucar.unidata.geoloc.Station stn = stnList.get(i);
stationMap.put(stn.getName(), new StationTracker(i));
latArray.set(i, stn.getLatitude());
lonArray.set(i, stn.getLongitude());
if (useAlt) altArray.set(i, stn.getAltitude());
idArray.set(i, stn.getName());
descArray.set(i, stn.getDescription());
if (useWmoId) wmoArray.set(i, stn.getWmoId());
}
try {
ncfile.write(latName, latArray);
ncfile.write(lonName, lonArray);
if (useAlt) ncfile.write(altName, altArray);
ncfile.writeStringData(idName, idArray);
ncfile.writeStringData(descName, descArray);
if (useWmoId) ncfile.writeStringData(wmoName, wmoArray);
} catch (InvalidRangeException e) {
e.printStackTrace();
throw new IllegalStateException(e);
}
}
private LatLonRect getBoundingBox(List stnList) {
ucar.unidata.geoloc.Station s = (ucar.unidata.geoloc.Station) stnList.get(0);
LatLonPointImpl llpt = new LatLonPointImpl();
llpt.set(s.getLatitude(), s.getLongitude());
LatLonRect rect = new LatLonRect(llpt, .001, .001);
for (int i = 1; i < stnList.size(); i++) {
s = (ucar.unidata.geoloc.Station) stnList.get(i);
llpt.set(s.getLatitude(), s.getLongitude());
rect.extend(llpt);
}
return rect;
}
private void writeDataFinish() throws IOException {
// finish global variables
ArrayInt.D0 totalArray = new ArrayInt.D0();
totalArray.set(profileIndex);
try {
ncfile.write(numProfilesTotalName, totalArray);
} catch (InvalidRangeException e) {
e.printStackTrace();
throw new IllegalStateException(e);
}
// finish the station data
int nstns = stnList.size();
ArrayInt.D1 firstProfileArray = new ArrayInt.D1(nstns);
ArrayInt.D1 numProfileArray = new ArrayInt.D1(nstns);
ArrayInt.D1 nextProfileArray = new ArrayInt.D1(nprofiles);
for (int i = 0; i < stnList.size(); i++) {
ucar.unidata.geoloc.Station stn = stnList.get(i);
StationTracker tracker = stationMap.get(stn.getName());
numProfileArray.set(i, tracker.numChildren);
int first = (tracker.link.size() > 0) ? tracker.link.get(0) : -1;
firstProfileArray.set(i, first);
if (tracker.link.size() > 0) {
// construct forward link
List<Integer> nextList = tracker.link;
for (int j = 0; j < nextList.size() - 1; j++) {
Integer curr = nextList.get(j);
Integer next = nextList.get(j + 1);
nextProfileArray.set(curr, next);
}
Integer curr = nextList.get(nextList.size() - 1);
nextProfileArray.set(curr, -1);
}
}
try {
ncfile.write(firstProfileName, firstProfileArray);
ncfile.write(numProfilesName, numProfileArray);
ncfile.write(nextProfileName, nextProfileArray);
} catch (InvalidRangeException e) {
e.printStackTrace();
throw new IllegalStateException(e);
}
// finish the profile data
ArrayInt.D1 nextObsArray = new ArrayInt.D1(recno);
ArrayInt.D1 firstObsArray = new ArrayInt.D1(nprofiles);
ArrayInt.D1 numObsArray = new ArrayInt.D1(nprofiles);
for (int i = 0; i < stnList.size(); i++) {
ucar.unidata.geoloc.Station stn = stnList.get(i);
StationTracker stnTracker = stationMap.get(stn.getName());
Set<Date> dates = stnTracker.profileMap.keySet();
for (Date date : dates) {
ProfileTracker proTracker = stnTracker.profileMap.get(date);
int trackerIndex = proTracker.parent_index;
numObsArray.set(trackerIndex, proTracker.numChildren);
int first = (proTracker.link.size() > 0) ? proTracker.link.get(0) : -1;
firstObsArray.set(trackerIndex, first);
if (proTracker.link.size() > 0) {
// construct forward link
List<Integer> nextList = proTracker.link;
for (int j = 0; j < nextList.size() - 1; j++) {
Integer curr = nextList.get(j);
Integer next = nextList.get(j + 1);
nextObsArray.set(curr, next);
}
Integer curr = nextList.get(nextList.size() - 1);
nextObsArray.set(curr, -1);
}
}
}
try {
ncfile.write(firstObsName, firstObsArray);
ncfile.write(numObsName, numObsArray);
ncfile.write(nextObsName, nextObsArray);
} catch (InvalidRangeException e) {
e.printStackTrace();
throw new IllegalStateException(e);
}
// finish the obs data
ncfile.updateAttribute(
null, new Attribute("time_coverage_start", dateFormatter.toDateTimeStringISO(minDate)));
ncfile.updateAttribute(
null, new Attribute("time_coverage_end", dateFormatter.toDateTimeStringISO(maxDate)));
}
private void createStations(List<ucar.unidata.geoloc.Station> stnList) throws IOException {
int nstns = stnList.size();
// see if there's altitude, wmoId for any stations
for (int i = 0; i < nstns; i++) {
ucar.unidata.geoloc.Station stn = stnList.get(i);
// if (!Double.isNaN(stn.getAltitude()))
// useAlt = true;
if ((stn.getWmoId() != null) && (stn.getWmoId().trim().length() > 0)) useWmoId = true;
}
/* if (useAlt)
ncfile.addGlobalAttribute("altitude_coordinate", altName); */
// find string lengths
for (int i = 0; i < nstns; i++) {
ucar.unidata.geoloc.Station station = stnList.get(i);
name_strlen = Math.max(name_strlen, station.getName().length());
desc_strlen = Math.max(desc_strlen, station.getDescription().length());
if (useWmoId) wmo_strlen = Math.max(wmo_strlen, station.getName().length());
}
LatLonRect llbb = getBoundingBox(stnList);
ncfile.addGlobalAttribute(
"geospatial_lat_min", Double.toString(llbb.getLowerLeftPoint().getLatitude()));
ncfile.addGlobalAttribute(
"geospatial_lat_max", Double.toString(llbb.getUpperRightPoint().getLatitude()));
ncfile.addGlobalAttribute(
"geospatial_lon_min", Double.toString(llbb.getLowerLeftPoint().getLongitude()));
ncfile.addGlobalAttribute(
"geospatial_lon_max", Double.toString(llbb.getUpperRightPoint().getLongitude()));
// add the dimensions
Dimension recordDim = ncfile.addUnlimitedDimension(recordDimName);
recordDims.add(recordDim);
Dimension stationDim = ncfile.addDimension(stationDimName, nstns);
stationDims.add(stationDim);
// add the station Variables using the station dimension
Variable v = ncfile.addVariable(latName, DataType.DOUBLE, stationDimName);
ncfile.addVariableAttribute(v, new Attribute("units", "degrees_north"));
ncfile.addVariableAttribute(v, new Attribute("long_name", "station latitude"));
v = ncfile.addVariable(lonName, DataType.DOUBLE, stationDimName);
ncfile.addVariableAttribute(v, new Attribute("units", "degrees_east"));
ncfile.addVariableAttribute(v, new Attribute("long_name", "station longitude"));
if (useAlt) {
v = ncfile.addVariable(altName, DataType.DOUBLE, stationDimName);
ncfile.addVariableAttribute(v, new Attribute("units", "meters"));
ncfile.addVariableAttribute(v, new Attribute("long_name", "station altitude"));
}
v = ncfile.addStringVariable(idName, stationDims, name_strlen);
ncfile.addVariableAttribute(v, new Attribute("long_name", "station identifier"));
v = ncfile.addStringVariable(descName, stationDims, desc_strlen);
ncfile.addVariableAttribute(v, new Attribute("long_name", "station description"));
if (useWmoId) {
v = ncfile.addStringVariable(wmoName, stationDims, wmo_strlen);
ncfile.addVariableAttribute(v, new Attribute("long_name", "station WMO id"));
}
v = ncfile.addVariable(numProfilesName, DataType.INT, stationDimName);
ncfile.addVariableAttribute(
v, new Attribute("long_name", "number of profiles in linked list for this station"));
v = ncfile.addVariable(firstProfileName, DataType.INT, stationDimName);
ncfile.addVariableAttribute(
v, new Attribute("long_name", "index of first profile in linked list for this station"));
}
/**
* _more_
*
* @param args _more_
* @throws IOException _more_
*/
public static void main(String args[]) throws IOException {
StringBuffer errlog = new StringBuffer();
String dqc_location = "http://thredds.ucar.edu/thredds/idd/radarLevel2";
DqcRadarDatasetCollection ds = factory("test", dqc_location, errlog);
System.out.println(" errs= " + errlog);
List stns = ds.getStations();
System.out.println(" nstns= " + stns.size());
Station stn = (Station) (stns.get(2));
// List ulist = stn.getRadarStationURIs();
// assert null != ulist;
Date ts1 = DateUnit.getStandardOrISO("2007-06-9T12:12:00");
Date ts2 = DateUnit.getStandardOrISO("2007-06-9T23:12:00");
List tlist = ds.getRadarStationTimes(stn.getValue(), ts1, ts2);
int sz = tlist.size();
Date ts0 = DateUnit.getStandardOrISO((String) tlist.get(1));
RadialDatasetSweep rds = ds.getRadarDataset(stn.getValue(), ts0);
URI stURL = ds.getRadarDatasetURI(stn.getValue(), ts0);
assert null != stURL;
assert 0 != sz;
DateSelection dateS = new DateSelection(ts1, ts2);
dateS.setInterval((double) 3600 * 1000);
dateS.setRoundTo((double) 3600 * 1000);
dateS.setPreRange((double) 500 * 1000);
dateS.setPostRange((double) 500 * 1000);
for (int i = 0; i < stns.size(); i++) {
stn = (Station) stns.get(i);
List times =
ds.getRadarStationTimes(
stn.getValue(),
new Date(System.currentTimeMillis() - 3600 * 1000 * 24 * 100),
new Date(System.currentTimeMillis()));
if (times.size() > 0) {
System.err.println(
stn
+ " times:"
+ times.size()
+ " "
+ times.get(0)
+ " - "
+ times.get(times.size() - 1));
} else {
System.err.println(stn + " no times");
}
}
System.exit(0);
List jList = ds.getDataURIs("KABX", dateS);
assert null != jList;
List mList = ds.getData("KABX", dateS, null);
assert null != mList;
// Date ts0 =
// DateFromString.getDateUsingCompleteDateFormat((String)tlist.get(1),"yyyy-MM-dd'T'HH:mm:ss");
Date ts = DateUnit.getStandardOrISO((String) tlist.get(1));
java.text.SimpleDateFormat isoDateTimeFormat;
isoDateTimeFormat = new java.text.SimpleDateFormat("yyyy-MM-dd'T'HH:mm:ss");
isoDateTimeFormat.setTimeZone(java.util.TimeZone.getTimeZone("GMT"));
String st = isoDateTimeFormat.format(ts);
}
/**
* _more_
*
* @param desc _more_
* @param dqc_location _more_
* @param errlog _more_
* @return _more_
* @throws IOException _more_
*/
public static DqcRadarDatasetCollection factory(
String desc, String dqc_location, StringBuffer errlog) throws IOException {
DqcFactory dqcFactory = new DqcFactory(true);
QueryCapability dqc = dqcFactory.readXML(dqc_location + "?returns=dqc");
if (dqc.hasFatalError()) {
errlog.append(dqc.getErrorMessages());
return null;
}
// have a look at what selectors there are before proceeding
SelectStation selStation = null;
SelectList selTime = null;
SelectService selService = null;
// SelectGeoRegion selRegion = null;
ArrayList selectors = dqc.getSelectors();
for (int i = 0; i < selectors.size(); i++) {
Selector s = (Selector) selectors.get(i);
if (s instanceof SelectStation) {
selStation = (SelectStation) s;
}
if (s instanceof SelectList) {
selTime = (SelectList) s;
}
if (s instanceof SelectService) {
selService = (SelectService) s;
}
// if (s instanceof SelectGeoRegion)
// selRegion = (SelectGeoRegion) s;
}
// gotta have these
if (selService == null) {
errlog.append("DqcStationaryRadarDataset must have Service selector");
return null;
}
if (selStation == null) {
errlog.append("DqcStationaryRadarDataset must have Station selector");
return null;
}
if (selTime == null) {
errlog.append("DqcStationaryRadarDataset must have Date selector");
return null;
}
// if (selRegion == null) {
// errlog.append("DqcStationaryRadarDataset must have GeoRegion selector");
// return null;
// }
// decide on which service
SelectService.ServiceChoice wantServiceChoice = null;
List services = selService.getChoices();
for (int i = 0; i < services.size(); i++) {
SelectService.ServiceChoice serviceChoice = (SelectService.ServiceChoice) services.get(i);
if (serviceChoice.getService().equals("HTTPServer")
&& serviceChoice.getDataFormat().equals("text/xml")) {
// && serviceChoice.getReturns().equals("data") ) // LOOK kludge
wantServiceChoice = serviceChoice;
}
}
if (wantServiceChoice == null) {
errlog.append(
"DqcStationObsDataset must have HTTPServer Service with DataFormat=text/plain, and returns=data");
return null;
}
return new DqcRadarDatasetCollection(
desc, dqc, selService, wantServiceChoice, selStation, null, selTime);
}
public static boolean isValidFile(NetcdfDataset ds) {
// Check that has a time dimension and a trajectory dimension.
List list = ds.getRootGroup().getDimensions();
if (list.size() != 2) return (false);
Dimension d;
for (int i = 0; i < 2; i++) {
d = (Dimension) list.get(i);
if (!d.getShortName().equals(timeDimNameDefault)
&& !d.getShortName().equals(trajDimNameDefault)) return (false);
}
// Check that has a trajectory coordinate variable.
Variable var = ds.getRootGroup().findVariable(trajVarNameDefault);
if (var == null) return (false);
list = var.getDimensions();
if (list.size() != 1) return (false);
d = (Dimension) list.get(0);
if (!d.getShortName().equals(trajDimNameDefault)) return (false);
// Check that has a time coordinate variable with units that are udunits time
var = ds.getRootGroup().findVariable(timeVarNameDefault);
if (var == null) return (false);
list = var.getDimensions();
if (list.size() != 1) return (false);
d = (Dimension) list.get(0);
if (!d.getShortName().equals(timeDimNameDefault)) return (false);
String units = var.findAttribute("units").getStringValue();
Date date = DateUnit.getStandardDate("0 " + units);
if (date == null) return (false);
// Check for variable latitude(time) with units of "deg".
var = ds.getRootGroup().findVariable(latVarNameDefault);
if (var == null) return (false);
list = var.getDimensions();
if (list.size() != 2) return (false);
for (int i = 0; i < 2; i++) {
d = (Dimension) list.get(i);
if (!d.getShortName().equals(timeDimNameDefault)
&& !d.getShortName().equals(trajDimNameDefault)) return (false);
}
// units = var.findAttribute( "units").getStringValue();
// if ( ! SimpleUnit.isCompatible( units, "degrees_north")) return( false);
// Check for variable longitude(time) with units of "deg".
var = ds.getRootGroup().findVariable(lonVarNameDefault);
if (var == null) return (false);
list = var.getDimensions();
if (list.size() != 2) return (false);
for (int i = 0; i < 2; i++) {
d = (Dimension) list.get(i);
if (!d.getShortName().equals(timeDimNameDefault)
&& !d.getShortName().equals(trajDimNameDefault)) return (false);
}
// units = var.findAttribute( "units").getStringValue();
// if ( ! SimpleUnit.isCompatible( units, "degrees_east")) return( false);
// Check for variable altitude(time) with units of "m".
var = ds.getRootGroup().findVariable(elevVarNameDefault);
if (var == null) return (false);
list = var.getDimensions();
if (list.size() != 2) return (false);
for (int i = 0; i < 2; i++) {
d = (Dimension) list.get(i);
if (!d.getShortName().equals(timeDimNameDefault)
&& !d.getShortName().equals(trajDimNameDefault)) return (false);
}
units = var.findAttribute("units").getStringValue();
if (!SimpleUnit.isCompatible(units, "m")) return (false);
return (true);
}