public void testAggCoordVar2(NetcdfFile ncfile) {
Variable time = ncfile.findVariable("time");
assert null != time;
assert time.getShortName().equals("time");
assert time.getRank() == 1 : time.getRank();
assert time.getShape()[0] == 3;
assert time.getDataType() == DataType.INT;
assert time.getDimension(0) == ncfile.findDimension("time");
try {
Array data = time.read();
assert (data instanceof ArrayInt);
IndexIterator dataI = data.getIndexIterator();
assert dataI.getIntNext() == 0 : dataI.getIntCurrent();
assert dataI.getIntNext() == 1 : dataI.getIntCurrent();
assert dataI.getIntNext() == 2 : dataI.getIntCurrent();
} catch (IOException io) {
io.printStackTrace();
assert false;
}
}
public void testAggCoordVar(NetcdfFile ncfile) {
Variable time = ncfile.findVariable("time");
assert null != time;
assert time.getShortName().equals("time");
assert time.getRank() == 1 : time.getRank();
assert time.getShape()[0] == 3;
assert time.getDataType() == DataType.INT;
assert time.getDimension(0) == ncfile.findDimension("time");
try {
Array data = time.read();
assert (data instanceof ArrayInt.D1) : data.getClass().getName();
ArrayInt.D1 dataI = (ArrayInt.D1) data;
assert dataI.get(0) == 0;
assert dataI.get(1) == 10;
assert dataI.get(2) == 99;
} catch (IOException io) {
io.printStackTrace();
assert false;
}
}
private void copySome(NetcdfFileWriteable ncfile, Variable oldVar, int nelems)
throws IOException {
String newName = N3iosp.makeValidNetcdfObjectName(oldVar.getShortName());
int[] shape = oldVar.getShape();
int[] origin = new int[oldVar.getRank()];
int size = shape[0];
for (int i = 0; i < size; i += nelems) {
origin[0] = i;
int left = size - i;
shape[0] = Math.min(nelems, left);
Array data;
try {
data = oldVar.read(origin, shape);
if (oldVar.getDataType() == DataType.STRING) {
data = convertToChar(ncfile.findVariable(newName), data);
}
if (data.getSize() > 0) { // zero when record dimension = 0
ncfile.write(newName, origin, data);
if (debug) System.out.println("write " + data.getSize() + " bytes");
}
} catch (InvalidRangeException e) {
e.printStackTrace();
throw new IOException(e.getMessage());
}
}
}
private Array convertToChar(Variable newVar, Array oldData) {
ArrayChar newData = (ArrayChar) Array.factory(DataType.CHAR, newVar.getShape());
Index ima = newData.getIndex();
IndexIterator ii = oldData.getIndexIterator();
while (ii.hasNext()) {
String s = (String) ii.getObjectNext();
int[] c = ii.getCurrentCounter();
for (int i = 0; i < c.length; i++) ima.setDim(i, c[i]);
newData.setString(ima, s);
}
return newData;
}
public void testReadData(NetcdfFile ncfile, String name) throws IOException {
Variable v = ncfile.findVariable(name);
assert null != v;
assert v.getShortName().equals(name);
assert v.getRank() == 3;
assert v.getSize() == 36 : v.getSize();
assert v.getShape()[0] == 3;
assert v.getShape()[1] == 3;
assert v.getShape()[2] == 4;
assert v.getDataType() == DataType.DOUBLE;
assert !v.isCoordinateVariable();
assert v.getDimension(0) == ncfile.findDimension("time");
assert v.getDimension(1) == ncfile.findDimension("lat");
assert v.getDimension(2) == ncfile.findDimension("lon");
Array data = v.read();
assert data.getRank() == 3;
assert data.getSize() == 36;
assert data.getShape()[0] == 3;
assert data.getShape()[1] == 3;
assert data.getShape()[2] == 4;
assert data.getElementType() == double.class;
int[] shape = data.getShape();
Index tIndex = data.getIndex();
for (int i = 0; i < shape[0]; i++)
for (int j = 0; j < shape[1]; j++)
for (int k = 0; k < shape[2]; k++) {
double val = data.getDouble(tIndex.set(i, j, k));
// System.out.println(" "+val);
assert TestUtils.close(val, 100 * i + 10 * j + k) : val;
}
}
private void doWrite2(NetcdfFileWriteable ncfile, String varName) throws Exception {
Variable v = ncfile.findVariable(varName);
int[] w = getWeights(v);
int[] shape = v.getShape();
Array aa = Array.factory(v.getDataType().getPrimitiveClassType(), shape);
Index ima = aa.getIndex();
for (int i = 0; i < shape[0]; i++) {
for (int j = 0; j < shape[1]; j++) {
aa.setDouble(ima.set(i, j), (double) (i * w[0] + j * w[1]));
}
}
ncfile.write(varName, aa);
}
public Array getData(Range range, String parameterName)
throws IOException, InvalidRangeException {
Variable variable = ncfile.getRootGroup().findVariable(parameterName);
int varRank = variable.getRank();
int[] varShape = variable.getShape();
List section = new ArrayList(varRank);
section.add(range);
for (int i = 1; i < varRank; i++) {
section.add(new Range(0, varShape[i] - 1));
}
Array array = variable.read(section);
if (array.getShape()[0] == 1) {
return (array.reduce(0));
} else {
return (array);
}
// return( array.getShape()[0] == 1 ? array.reduce( 0 ) : array);
}
public void testAggCoordVar3(NetcdfFile ncfile) throws IOException {
Variable time = ncfile.findVariable("time");
assert null != time;
assert time.getShortName().equals("time");
assert time.getRank() == 1 : time.getRank();
assert time.getShape()[0] == 3;
assert time.getDataType() == DataType.DOUBLE : time.getDataType();
assert time.getDimension(0) == ncfile.findDimension("time");
Array data = time.read();
assert (data instanceof ArrayDouble);
IndexIterator dataI = data.getIndexIterator();
double val = dataI.getDoubleNext();
assert Misc.closeEnough(val, 0.0) : val;
assert Misc.closeEnough(dataI.getDoubleNext(), 10.0) : dataI.getDoubleCurrent();
assert Misc.closeEnough(dataI.getDoubleNext(), 99.0) : dataI.getDoubleCurrent();
}
public void testAggCoordVarScan(NetcdfFile ncfile) throws IOException {
Variable time = ncfile.findVariable("time");
assert null != time;
assert time.getShortName().equals("time");
assert time.getRank() == 1 : time.getRank();
assert time.getShape()[0] == 3;
assert time.getDataType() == DataType.INT : time.getDataType();
assert time.getDimension(0) == ncfile.findDimension("time");
int count = 0;
Array data = time.read();
assert (data instanceof ArrayInt);
while (data.hasNext()) {
int val = data.nextInt();
assert val == count * 10 : val + "!=" + count * 10;
count++;
}
}
/** Converts a 3D variable to a {@link Metadata} representation */
private static void convert3DVariable(GridDatatype g, Date date, Map<String, Metadata> metaMap)
throws IOException {
Variable v = g.getVariable();
System.out.println("Reading: " + v.getFullName());
Array values = v.read();
int h = v.getShape(1);
int w = v.getShape(2);
for (int i = 0; i < h; ++i) {
for (int j = 0; j < w; ++j) {
LatLonPoint pt = g.getCoordinateSystem().getLatLon(j, i);
String hash =
GeoHash.encode((float) pt.getLatitude(), (float) pt.getLongitude(), 10).toLowerCase();
Metadata meta = metaMap.get(hash);
if (meta == null) {
/* We need to create Metadata for this location */
meta = new Metadata();
UUID metaUUID = UUID.nameUUIDFromBytes(hash.getBytes());
meta.setName(metaUUID.toString());
SpatialProperties location =
new SpatialProperties((float) pt.getLatitude(), (float) pt.getLongitude());
meta.setSpatialProperties(location);
TemporalProperties time = new TemporalProperties(date.getTime());
meta.setTemporalProperties(time);
metaMap.put(hash, meta);
}
String featureName = v.getFullName().toLowerCase();
float featureValue = values.getFloat(i * w + j);
Feature feature = new Feature(featureName, featureValue);
meta.putAttribute(feature);
}
}
}
public void testAggCoordVarNoCoordsDir(NetcdfFile ncfile) throws IOException {
Variable time = ncfile.findVariable("time");
assert null != time;
assert time.getShortName().equals("time");
assert time.getRank() == 1 : time.getRank();
assert time.getShape()[0] == 3;
assert time.getDataType() == DataType.STRING : time.getDataType();
assert time.getDimension(0) == ncfile.findDimension("time");
Array data = time.read();
assert (data instanceof ArrayObject);
IndexIterator dataI = data.getIndexIterator();
String coordName = (String) dataI.getObjectNext();
assert coordName.equals("time0Dir.nc") : coordName;
coordName = (String) dataI.getObjectNext();
assert coordName.equals("time1Dir.nc") : coordName;
coordName = (String) dataI.getObjectNext();
assert coordName.equals("time2Dir.nc") : coordName;
}
public void testCoordVar(NetcdfFile ncfile) {
Variable lat = ncfile.findVariable("lat");
assert null != lat;
assert lat.getShortName().equals("lat");
assert lat.getRank() == 1;
assert lat.getSize() == 3;
assert lat.getShape()[0] == 3;
assert lat.getDataType() == DataType.FLOAT;
assert !lat.isUnlimited();
assert lat.getDimension(0).equals(ncfile.findDimension("lat"));
Attribute att = lat.findAttribute("units");
assert null != att;
assert !att.isArray();
assert att.isString();
assert att.getDataType() == DataType.STRING;
assert att.getStringValue().equals("degrees_north");
assert att.getNumericValue() == null;
assert att.getNumericValue(3) == null;
try {
Array data = lat.read();
assert data.getRank() == 1;
assert data.getSize() == 3;
assert data.getShape()[0] == 3;
assert data.getElementType() == float.class;
IndexIterator dataI = data.getIndexIterator();
assert TestUtils.close(dataI.getDoubleNext(), 41.0);
assert TestUtils.close(dataI.getDoubleNext(), 40.0);
assert TestUtils.close(dataI.getDoubleNext(), 39.0);
} catch (IOException io) {
}
}
private void makeCoordinateData(
int datatype,
Variable time,
Variable elev,
Variable azi,
Variable nradialsVar,
Variable ngatesVar,
List groups) {
Array timeData = Array.factory(time.getDataType().getPrimitiveClassType(), time.getShape());
IndexIterator timeDataIter = timeData.getIndexIterator();
Array elevData = Array.factory(elev.getDataType().getPrimitiveClassType(), elev.getShape());
IndexIterator elevDataIter = elevData.getIndexIterator();
Array aziData = Array.factory(azi.getDataType().getPrimitiveClassType(), azi.getShape());
IndexIterator aziDataIter = aziData.getIndexIterator();
Array nradialsData =
Array.factory(nradialsVar.getDataType().getPrimitiveClassType(), nradialsVar.getShape());
IndexIterator nradialsIter = nradialsData.getIndexIterator();
Array ngatesData =
Array.factory(ngatesVar.getDataType().getPrimitiveClassType(), ngatesVar.getShape());
IndexIterator ngatesIter = ngatesData.getIndexIterator();
int last_msecs = Integer.MIN_VALUE;
int nscans = groups.size();
int maxRadials = volScan.getMaxRadials();
for (int i = 0; i < nscans; i++) {
List scanGroup = (List) groups.get(i);
int nradials = scanGroup.size();
Cinrad2Record first = null;
for (int j = 0; j < nradials; j++) {
Cinrad2Record r = (Cinrad2Record) scanGroup.get(j);
if (first == null) first = r;
timeDataIter.setIntNext(r.data_msecs);
elevDataIter.setFloatNext(r.getElevation());
aziDataIter.setFloatNext(r.getAzimuth());
if (r.data_msecs < last_msecs)
logger.warn("makeCoordinateData time out of order " + r.data_msecs);
last_msecs = r.data_msecs;
}
for (int j = nradials; j < maxRadials; j++) {
timeDataIter.setIntNext(MISSING_INT);
elevDataIter.setFloatNext(MISSING_FLOAT);
aziDataIter.setFloatNext(MISSING_FLOAT);
}
nradialsIter.setIntNext(nradials);
ngatesIter.setIntNext(first.getGateCount(datatype));
}
time.setCachedData(timeData, false);
elev.setCachedData(elevData, false);
azi.setCachedData(aziData, false);
nradialsVar.setCachedData(nradialsData, false);
ngatesVar.setCachedData(ngatesData, false);
}
public void testNC3Read() throws IOException {
NetcdfFile ncfile = TestDir.openFileLocal("testWrite.nc");
assert (null != ncfile.findDimension("lat"));
assert (null != ncfile.findDimension("lon"));
Variable temp = null;
assert (null != (temp = ncfile.findVariable("temperature")));
// read entire array
Array A;
try {
A = temp.read();
} catch (IOException e) {
System.err.println("ERROR reading file");
assert (false);
return;
}
assert (A.getRank() == 2);
int i, j;
Index ima = A.getIndex();
int[] shape = A.getShape();
assert shape[0] == 64;
assert shape[1] == 128;
for (i = 0; i < shape[0]; i++) {
for (j = 0; j < shape[1]; j++) {
double dval = A.getDouble(ima.set(i, j));
assert (dval == (double) (i * 1000000 + j * 1000)) : dval;
}
}
// read part of array
int[] origin2 = new int[2];
int[] shape2 = new int[2];
shape2[0] = 1;
shape2[1] = temp.getShape()[1];
try {
A = temp.read(origin2, shape2);
} catch (InvalidRangeException e) {
System.err.println("ERROR reading file " + e);
assert (false);
return;
} catch (IOException e) {
System.err.println("ERROR reading file");
assert (false);
return;
}
assert (A.getRank() == 2);
for (j = 0; j < shape2[1]; j++) {
assert (A.getDouble(ima.set(0, j)) == (double) (j * 1000));
}
// rank reduction
Array Areduce = A.reduce();
Index ima2 = Areduce.getIndex();
assert (Areduce.getRank() == 1);
for (j = 0; j < shape2[1]; j++) {
assert (Areduce.getDouble(ima2.set(j)) == (double) (j * 1000));
}
// read char variable
Variable c = null;
assert (null != (c = ncfile.findVariable("svar")));
try {
A = c.read();
} catch (IOException e) {
assert (false);
}
assert (A instanceof ArrayChar);
ArrayChar ac = (ArrayChar) A;
String val = ac.getString(ac.getIndex());
assert val.equals("Testing 1-2-3") : val;
// System.out.println( "val = "+ val);
// read char variable 2
Variable c2 = null;
assert (null != (c2 = ncfile.findVariable("svar2")));
try {
A = c2.read();
} catch (IOException e) {
assert (false);
}
assert (A instanceof ArrayChar);
ArrayChar ac2 = (ArrayChar) A;
assert (ac2.getString().equals("Two pairs of ladies stockings!"));
// read String Array
Variable c3 = null;
assert (null != (c3 = ncfile.findVariable("names")));
try {
A = c3.read();
} catch (IOException e) {
assert (false);
}
assert (A instanceof ArrayChar);
ArrayChar ac3 = (ArrayChar) A;
ima = ac3.getIndex();
assert (ac3.getString(ima.set(0)).equals("No pairs of ladies stockings!"));
assert (ac3.getString(ima.set(1)).equals("One pair of ladies stockings!"));
assert (ac3.getString(ima.set(2)).equals("Two pairs of ladies stockings!"));
// read String Array - 2
Variable c4 = null;
assert (null != (c4 = ncfile.findVariable("names2")));
try {
A = c4.read();
} catch (IOException e) {
assert (false);
}
assert (A instanceof ArrayChar);
ArrayChar ac4 = (ArrayChar) A;
ima = ac4.getIndex();
assert (ac4.getString(0).equals("0 pairs of ladies stockings!"));
assert (ac4.getString(1).equals("1 pair of ladies stockings!"));
assert (ac4.getString(2).equals("2 pairs of ladies stockings!"));
// System.out.println( "ncfile = "+ ncfile);
ncfile.close();
System.out.println("**************TestRead done");
}
/**
* Make the station variables from a representative station
*
* @param stations list of stations
* @param dim station dimension
* @return the list of variables
*/
protected List<Variable> makeStationVars(List<GempakStation> stations, Dimension dim) {
int numStations = stations.size();
boolean useSTID = true;
for (GempakStation station : stations) {
if (station.getSTID().equals("")) {
useSTID = false;
break;
}
}
List<Variable> vars = new ArrayList<Variable>();
List<String> stnKeyNames = gemreader.getStationKeyNames();
for (String varName : stnKeyNames) {
Variable v = makeStationVariable(varName, dim);
// use STNM or STID as the name or description
Attribute stIDAttr = new Attribute("standard_name", "station_id");
if (varName.equals(GempakStation.STID) && useSTID) {
v.addAttribute(stIDAttr);
}
if (varName.equals(GempakStation.STNM) && !useSTID) {
v.addAttribute(stIDAttr);
}
vars.add(v);
}
// see if we fill these in completely now
if ((dim != null) && (numStations > 0)) {
for (Variable v : vars) {
Array varArray;
if (v.getDataType().equals(DataType.CHAR)) {
int[] shape = v.getShape();
varArray = new ArrayChar.D2(shape[0], shape[1]);
} else {
varArray = get1DArray(v.getDataType(), numStations);
}
int index = 0;
String varname = v.getFullName();
for (GempakStation stn : stations) {
String test = "";
if (varname.equals(GempakStation.STID)) {
test = stn.getName();
} else if (varname.equals(GempakStation.STNM)) {
((ArrayInt.D1) varArray)
.set(
index,
// (int) (stn.getSTNM() / 10));
(int) (stn.getSTNM()));
} else if (varname.equals(GempakStation.SLAT)) {
((ArrayFloat.D1) varArray).set(index, (float) stn.getLatitude());
} else if (varname.equals(GempakStation.SLON)) {
((ArrayFloat.D1) varArray).set(index, (float) stn.getLongitude());
} else if (varname.equals(GempakStation.SELV)) {
((ArrayFloat.D1) varArray).set(index, (float) stn.getAltitude());
} else if (varname.equals(GempakStation.STAT)) {
test = stn.getSTAT();
} else if (varname.equals(GempakStation.COUN)) {
test = stn.getCOUN();
} else if (varname.equals(GempakStation.STD2)) {
test = stn.getSTD2();
} else if (varname.equals(GempakStation.SPRI)) {
((ArrayInt.D1) varArray).set(index, stn.getSPRI());
} else if (varname.equals(GempakStation.SWFO)) {
test = stn.getSWFO();
} else if (varname.equals(GempakStation.WFO2)) {
test = stn.getWFO2();
}
if (!test.equals("")) {
((ArrayChar.D2) varArray).setString(index, test);
}
index++;
}
v.setCachedData(varArray, false);
}
}
return vars;
}
Write2ncRect(NetcdfFile bufr, String fileOutName, boolean fill)
throws IOException, InvalidRangeException {
NetcdfFileWriteable ncfile = NetcdfFileWriteable.createNew(fileOutName, fill);
if (debug) {
System.out.println("FileWriter write " + bufr.getLocation() + " to " + fileOutName);
}
// global attributes
List<Attribute> glist = bufr.getGlobalAttributes();
for (Attribute att : glist) {
String useName = N3iosp.makeValidNetcdfObjectName(att.getName());
Attribute useAtt;
if (att.isArray()) useAtt = ncfile.addGlobalAttribute(useName, att.getValues());
else if (att.isString()) useAtt = ncfile.addGlobalAttribute(useName, att.getStringValue());
else useAtt = ncfile.addGlobalAttribute(useName, att.getNumericValue());
if (debug) System.out.println("add gatt= " + useAtt);
}
// global dimensions
Dimension recordDim = null;
Map<String, Dimension> dimHash = new HashMap<String, Dimension>();
for (Dimension oldD : bufr.getDimensions()) {
String useName = N3iosp.makeValidNetcdfObjectName(oldD.getName());
boolean isRecord = useName.equals("record");
Dimension newD = ncfile.addDimension(useName, oldD.getLength(), true, false, false);
dimHash.put(newD.getName(), newD);
if (isRecord) recordDim = newD;
if (debug) System.out.println("add dim= " + newD);
}
// Variables
Structure recordStruct = (Structure) bufr.findVariable(BufrIosp.obsRecord);
for (Variable oldVar : recordStruct.getVariables()) {
if (oldVar.getDataType() == DataType.STRUCTURE) continue;
String varName = N3iosp.makeValidNetcdfObjectName(oldVar.getShortName());
DataType newType = oldVar.getDataType();
List<Dimension> newDims = new ArrayList<Dimension>();
newDims.add(recordDim);
for (Dimension dim : oldVar.getDimensions()) {
newDims.add(ncfile.addDimension(oldVar.getShortName() + "_strlen", dim.getLength()));
}
Variable newVar = ncfile.addVariable(varName, newType, newDims);
if (debug) System.out.println("add var= " + newVar);
// attributes
List<Attribute> attList = oldVar.getAttributes();
for (Attribute att : attList) {
String useName = N3iosp.makeValidNetcdfObjectName(att.getName());
if (att.isArray()) ncfile.addVariableAttribute(varName, useName, att.getValues());
else if (att.isString())
ncfile.addVariableAttribute(varName, useName, att.getStringValue());
else ncfile.addVariableAttribute(varName, useName, att.getNumericValue());
}
}
// int max_seq = countSeq(recordStruct);
// Dimension seqD = ncfile.addDimension("level", max_seq);
for (Variable v : recordStruct.getVariables()) {
if (v.getDataType() != DataType.STRUCTURE) continue;
String structName = N3iosp.makeValidNetcdfObjectName(v.getShortName());
int shape[] = v.getShape();
Dimension structDim = ncfile.addDimension(structName, shape[0]);
Structure struct = (Structure) v;
for (Variable seqVar : struct.getVariables()) {
String varName = N3iosp.makeValidNetcdfObjectName(seqVar.getShortName() + "-" + structName);
DataType newType = seqVar.getDataType();
List<Dimension> newDims = new ArrayList<Dimension>();
newDims.add(recordDim);
newDims.add(structDim);
for (Dimension dim : seqVar.getDimensions()) {
newDims.add(ncfile.addDimension(seqVar.getShortName() + "_strlen", dim.getLength()));
}
Variable newVar = ncfile.addVariable(varName, newType, newDims);
if (debug) System.out.println("add var= " + newVar);
// attributes
List<Attribute> attList = seqVar.getAttributes();
for (Attribute att : attList) {
String useName = N3iosp.makeValidNetcdfObjectName(att.getName());
if (att.isArray()) ncfile.addVariableAttribute(varName, useName, att.getValues());
else if (att.isString())
ncfile.addVariableAttribute(varName, useName, att.getStringValue());
else ncfile.addVariableAttribute(varName, useName, att.getNumericValue());
}
}
}
// create the file
ncfile.create();
if (debug) System.out.println("File Out= " + ncfile.toString());
// boolean ok = (Boolean) ncfile.sendIospMessage(NetcdfFile.IOSP_MESSAGE_ADD_RECORD_STRUCTURE);
double total = copyVarData(ncfile, recordStruct);
ncfile.flush();
System.out.println("FileWriter done total bytes = " + total);
ncfile.close();
}
private void makeCoordinateDataWithMissing(
int datatype,
Variable time,
Variable elev,
Variable azi,
Variable nradialsVar,
Variable ngatesVar,
List groups) {
Array timeData = Array.factory(time.getDataType().getPrimitiveClassType(), time.getShape());
Index timeIndex = timeData.getIndex();
Array elevData = Array.factory(elev.getDataType().getPrimitiveClassType(), elev.getShape());
Index elevIndex = elevData.getIndex();
Array aziData = Array.factory(azi.getDataType().getPrimitiveClassType(), azi.getShape());
Index aziIndex = aziData.getIndex();
Array nradialsData =
Array.factory(nradialsVar.getDataType().getPrimitiveClassType(), nradialsVar.getShape());
IndexIterator nradialsIter = nradialsData.getIndexIterator();
Array ngatesData =
Array.factory(ngatesVar.getDataType().getPrimitiveClassType(), ngatesVar.getShape());
IndexIterator ngatesIter = ngatesData.getIndexIterator();
// first fill with missing data
IndexIterator ii = timeData.getIndexIterator();
while (ii.hasNext()) ii.setIntNext(MISSING_INT);
ii = elevData.getIndexIterator();
while (ii.hasNext()) ii.setFloatNext(MISSING_FLOAT);
ii = aziData.getIndexIterator();
while (ii.hasNext()) ii.setFloatNext(MISSING_FLOAT);
// now set the coordinate variables from the Cinrad2Record radial
int last_msecs = Integer.MIN_VALUE;
int nscans = groups.size();
try {
for (int scan = 0; scan < nscans; scan++) {
List scanGroup = (List) groups.get(scan);
int nradials = scanGroup.size();
Cinrad2Record first = null;
for (int j = 0; j < nradials; j++) {
Cinrad2Record r = (Cinrad2Record) scanGroup.get(j);
if (first == null) first = r;
int radial = r.radial_num - 1;
timeData.setInt(timeIndex.set(scan, radial), r.data_msecs);
elevData.setFloat(elevIndex.set(scan, radial), r.getElevation());
aziData.setFloat(aziIndex.set(scan, radial), r.getAzimuth());
if (r.data_msecs < last_msecs)
logger.warn("makeCoordinateData time out of order " + r.data_msecs);
last_msecs = r.data_msecs;
}
nradialsIter.setIntNext(nradials);
ngatesIter.setIntNext(first.getGateCount(datatype));
}
} catch (java.lang.ArrayIndexOutOfBoundsException ae) {
logger.debug("Cinrad2IOSP.uncompress ", ae);
}
time.setCachedData(timeData, false);
elev.setCachedData(elevData, false);
azi.setCachedData(aziData, false);
nradialsVar.setCachedData(nradialsData, false);
ngatesVar.setCachedData(ngatesData, false);
}