// from biojava structure, convert to own user model public void createUserModel(Structure struc) { // read default MMFFtypes for atoms if (modelList == null) modelList = new ArrayList<Model>(); Model model = null; for (int i = 0; i < struc.nrModels(); i++) { // for each model, create and add to model list model = new Model(); model.setModelName("Model" + (i + 1)); model.setMolecule(struc.getModel(i)); // set the model modelList.add(model); } }