public static FeatureEvidence createFeatureEvidence(
String name, CvTerm featureType, Range range) {
FeatureEvidence feature = new DefaultFeatureEvidence(name, null, featureType);
if (range != null) {
feature.getRanges().add(range);
}
return feature;
}
public static FeatureEvidence createFeatureEvidence(
String name, CvTerm featureType, Collection<Range> ranges) {
FeatureEvidence feature = new DefaultFeatureEvidence(name, null, featureType);
if (ranges != null) {
feature.getRanges().addAll(ranges);
}
return feature;
}
public static FeatureEvidence createFeatureEvidence(
String name, CvTerm featureType, Collection<CvTerm> detectionMethods, Range range) {
FeatureEvidence feature = new DefaultFeatureEvidence(name, null, featureType);
if (detectionMethods != null) {
feature.getDetectionMethods().addAll(detectionMethods);
}
if (range != null) {
feature.getRanges().add(range);
}
return feature;
}
@Test
@Ignore
public void test_write_interaction_inferred()
throws XMLStreamException, IOException, IllegalRangeException {
BinaryInteractionEvidence interaction = new DefaultNamedBinaryInteractionEvidence();
ParticipantEvidence participant =
new DefaultNamedParticipantEvidence(InteractorUtils.createUnknownBasicInteractor());
ParticipantEvidence participant2 =
new DefaultNamedParticipantEvidence(InteractorUtils.createUnknownBasicInteractor());
ParticipantEvidence participant3 =
new DefaultNamedParticipantEvidence(InteractorUtils.createUnknownBasicInteractor());
ParticipantEvidence participant4 =
new DefaultNamedParticipantEvidence(InteractorUtils.createUnknownBasicInteractor());
// two inferred interactiosn f1, f2, f3 and f3,f4
FeatureEvidence f1 = new DefaultFeatureEvidence();
f1.getRanges().add(RangeUtils.createRangeFromString("1-4"));
FeatureEvidence f2 = new DefaultFeatureEvidence();
f2.getRanges().add(RangeUtils.createRangeFromString("1-4"));
FeatureEvidence f3 = new DefaultFeatureEvidence();
f1.getLinkedFeatures().add(f2);
f1.getLinkedFeatures().add(f3);
f2.getLinkedFeatures().add(f1);
f2.getLinkedFeatures().add(f3);
f3.getLinkedFeatures().add(f1);
f3.getLinkedFeatures().add(f2);
participant.addFeature(f1);
participant2.addFeature(f2);
participant3.addFeature(f3);
interaction.addParticipant(participant);
interaction.addParticipant(participant2);
elementCache.clear();
XmlNamedBinaryInteractionEvidenceWriter writer =
new XmlNamedBinaryInteractionEvidenceWriter(createStreamWriter(), this.elementCache);
writer.write(interaction);
streamWriter.flush();
Assert.assertEquals(this.interaction_inferred, output.toString());
}