@Test
public void test03() {
File file = new File("TestData/EliminateTransTest03.owl");
OWLOntologyManager man = OWLManager.createOWLOntologyManager();
OWLOntology ontology;
try {
ontology = man.loadOntologyFromOntologyDocument(file);
HornSHIQNormalizer normalizer = new HornSHIQNormalizer();
OWLOntology normalizedOnt = normalizer.normalize(ontology);
HornALCHIQTransNormalizer normalizer1 = new HornALCHIQTransNormalizer();
OWLOntology normalizedOnt1 = normalizer1.normalize(normalizedOnt);
HornALCHIQNormalizer normalizer2 = new HornALCHIQNormalizer();
OWLOntology normalizedOnt2 = normalizer2.normalize(normalizedOnt1);
man.saveOntology(
normalizedOnt2, IRI.create(new File("TestData/EliminateTransTest03Norm.owl")));
} catch (OWLOntologyCreationException e) {
// TODO Auto-generated catch block
e.printStackTrace();
} catch (OWLOntologyStorageException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
public void saveOntology() {
try {
manager.saveOntology(topIxOnt);
} catch (OWLOntologyStorageException ose) {
System.out.println(ose.getMessage());
}
}
@Override
public boolean test() {
// Check if the ontology contains any axioms
System.out.println("Number of axioms: " + ontology.getAxiomCount());
// Every ontology has a unique ID.
System.out.println("Current Ontology ID: " + ontology.getOntologyID());
// test of CRUD
// test of Create
System.out.println("Number of children: " + factory.getAllChildInstances().size());
System.out.println("Create a new child ");
factory.createChild("Nicola");
System.out.println("Number of children: " + factory.getAllChildInstances().size());
// test of Read
Child c = factory.getChild("Nicola");
System.out.println(c.getOwlIndividual());
// TODO: test of Update
// test of Delete
c.delete();
System.out.println("Number of children: " + factory.getAllChildInstances().size());
// save ABox, TBox, RBox to separate files.
try {
ontlgAbox = manager.createOntology(ontology.getABoxAxioms(true));
ontlgTbox = manager.createOntology(ontology.getTBoxAxioms(true));
ontlgRbox = manager.createOntology(ontology.getRBoxAxioms(true));
} catch (OWLOntologyCreationException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
try {
manager.saveOntology(ontlgAbox, IRI.create(new File("individual/Abox.owl")));
manager.saveOntology(ontlgTbox, IRI.create(new File("individual/Tbox.owl")));
manager.saveOntology(ontlgRbox, IRI.create(new File("individual/Rbox.owl")));
} catch (OWLOntologyStorageException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
return true;
}
private IRI executeRule(final Rule r, final IRI inputIRI) {
try {
PelletOptions.USE_ANNOTATION_SUPPORT = true;
PelletOptions.TREAT_ALL_VARS_DISTINGUISHED = controller.isTreatAllVariablesDistinguished();
QueryEngineType type = (QueryEngineType) controller.getQueryEngineType();
final QueryExecution qe;
final ByteArrayOutputStream w = new ByteArrayOutputStream();
final Query qSelect = getSelectExampleQuery(r.getQuery());
if (type.toPellet() != null) {
final OWLOntology queryOntology = getInputOntologyForRule(inputIRI);
final PelletReasoner reasoner =
PelletReasonerFactory.getInstance().createReasoner(queryOntology);
log.info("Ontology size: " + reasoner.getKB().getInfo());
final Dataset ds = kb2ds(reasoner.getKB());
final QueryExecution qeSelect =
SparqlDLExecutionFactory.create(qSelect, ds, null, type.toPellet());
final ResultSet rs = qeSelect.execSelect();
controller.setSelect(r, rs.getResultVars(), ResultSetFormatter.toList(rs));
qe =
SparqlDLExecutionFactory.create(
r.getQuery(), kb2ds(reasoner.getKB()), null, type.toPellet());
qe.execConstruct().write(w);
} else {
final ByteArrayOutputStream w2 = new ByteArrayOutputStream();
final Model model = ModelFactory.createDefaultModel();
try {
controller
.getOWLOntologyManager()
.saveOntology(queryOntology, new TurtleOntologyFormat(), w2);
model.read(new ByteArrayInputStream(w2.toByteArray()), "", "TURTLE");
final QueryExecution qeSelect = QueryExecutionFactory.create(qSelect, model);
final ResultSet rs = qeSelect.execSelect();
controller.setSelect(r, rs.getResultVars(), ResultSetFormatter.toList(rs));
qe = QueryExecutionFactory.create(r.getQuery(), model);
qe.execConstruct().write(w);
} catch (OWLOntologyStorageException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
final IRI outputIRI = getOntologyIRIForRuleName(r.getName());
// loaded generated ontology
final OWLOntology generatedOntology =
controller
.getOWLOntologyManager()
.loadOntologyFromOntologyDocument(new ByteArrayInputStream(w.toByteArray()));
controller.updateOntology(
generatedOntology,
outputIRI,
inputIRI,
controller.getRuleSpec().getResultFile(r).toURI());
controller.setStatus("Rule " + r.getName() + " successfully executed");
return outputIRI;
} catch (OWLOntologyCreationException e1) {
controller.setStatus(e1.getMessage());
return null;
}
}
