Exemple #1
0
  /**
   * This is an equivalent to a copy constructor. Creates a new copy of the given <code>obsToCopy
   * </code> with a null obs id
   *
   * @param obsToCopy The Obs that is going to be copied
   * @return a new Obs object with all the same attributes as the given obs
   */
  public static Obs newInstance(Obs obsToCopy) {
    Obs newObs =
        new Obs(
            obsToCopy.getPerson(),
            obsToCopy.getConcept(),
            obsToCopy.getObsDatetime(),
            obsToCopy.getLocation());

    newObs.setObsGroup(obsToCopy.getObsGroup());
    newObs.setAccessionNumber(obsToCopy.getAccessionNumber());
    newObs.setValueCoded(obsToCopy.getValueCoded());
    newObs.setValueDrug(obsToCopy.getValueDrug());
    newObs.setValueGroupId(obsToCopy.getValueGroupId());
    newObs.setValueDatetime(obsToCopy.getValueDatetime());
    newObs.setValueNumeric(obsToCopy.getValueNumeric());
    newObs.setValueModifier(obsToCopy.getValueModifier());
    newObs.setValueText(obsToCopy.getValueText());
    newObs.setComment(obsToCopy.getComment());
    newObs.setOrder(obsToCopy.getOrder());
    newObs.setEncounter(obsToCopy.getEncounter());
    newObs.setDateStarted(obsToCopy.getDateStarted());
    newObs.setDateStopped(obsToCopy.getDateStopped());
    newObs.setCreator(obsToCopy.getCreator());
    newObs.setDateCreated(obsToCopy.getDateCreated());
    newObs.setVoided(obsToCopy.getVoided());
    newObs.setVoidedBy(obsToCopy.getVoidedBy());
    newObs.setDateVoided(obsToCopy.getDateVoided());
    newObs.setVoidReason(obsToCopy.getVoidReason());

    newObs.setValueComplex(obsToCopy.getValueComplex());
    newObs.setComplexData(obsToCopy.getComplexData());

    if (obsToCopy.getGroupMembers() != null)
      for (Obs member : obsToCopy.getGroupMembers()) {
        // if the obs hasn't been saved yet, no need to duplicate it
        if (member.getObsId() == null) newObs.addGroupMember(member);
        else newObs.addGroupMember(Obs.newInstance(member));
      }

    return newObs;
  }
  /**
   * Adds the column headers and column data to the DataSet
   *
   * @param dataSet
   * @param encounters
   * @param patientIdentifierTypes
   * @param optionalColumns
   * @param columnDisplayFormat
   * @param maxColumnHeaderWidth
   * @param allColumns
   * @param fieldMap
   * @return
   */
  public DataSet addData(
      SimpleDataSet dataSet,
      List<Encounter> encounters,
      List<PatientIdentifierType> patientIdentifierTypes,
      List<EncounterAndObsDataSetDefinition.ObsOptionalColumn> optionalColumns,
      List<EncounterAndObsDataSetDefinition.ColumnDisplayFormat> columnDisplayFormat,
      Integer maxColumnHeaderWidth,
      Set<ObsColumnDescriptor> allColumns,
      Map<Encounter, Map<ObsColumnDescriptor, Obs>> fieldMap) {
    for (Encounter encounter : encounters) {

      DataSetRow row = new DataSetRow();

      List<String> providerNames = new ArrayList<String>();
      for (EncounterProvider ep : encounter.getEncounterProviders()) {
        providerNames.add(ep.getProvider().getName());
      }

      // Add the standard columns for encounters
      DataSetColumn c1 =
          new DataSetColumn(
              ObjectUtil.trimStringIfNeeded("ENCOUNTER_ID", maxColumnHeaderWidth),
              ObjectUtil.trimStringIfNeeded("ENCOUNTER_ID", maxColumnHeaderWidth),
              Integer.class);
      row.addColumnValue(c1, encounter.getEncounterId());
      DataSetColumn c2 =
          new DataSetColumn(
              ObjectUtil.trimStringIfNeeded("ENCOUNTER_DATETIME", maxColumnHeaderWidth),
              ObjectUtil.trimStringIfNeeded("ENCOUNTER_DATETIME", maxColumnHeaderWidth),
              String.class);
      row.addColumnValue(c2, encounter.getEncounterDatetime().toString());
      DataSetColumn c3 =
          new DataSetColumn(
              ObjectUtil.trimStringIfNeeded("LOCATION", maxColumnHeaderWidth),
              ObjectUtil.trimStringIfNeeded("LOCATION", maxColumnHeaderWidth),
              String.class);
      row.addColumnValue(
          c3, (encounter.getLocation() != null) ? encounter.getLocation().getName() : EMPTY);
      DataSetColumn c4 =
          new DataSetColumn(
              ObjectUtil.trimStringIfNeeded("PROVIDER", maxColumnHeaderWidth),
              ObjectUtil.trimStringIfNeeded("PROVIDER", maxColumnHeaderWidth),
              String.class);
      row.addColumnValue(c4, OpenmrsUtil.join(providerNames, ", "));
      DataSetColumn c5 =
          new DataSetColumn(
              ObjectUtil.trimStringIfNeeded("INTERNAL_PATIENT_ID", maxColumnHeaderWidth),
              ObjectUtil.trimStringIfNeeded("INTERNAL_PATIENT_ID", maxColumnHeaderWidth),
              Integer.class);
      row.addColumnValue(
          c5, encounter.getPatient() != null ? encounter.getPatient().getPatientId() : EMPTY);

      if (patientIdentifierTypes != null) {
        for (PatientIdentifierType pit : patientIdentifierTypes) {
          List<PatientIdentifier> patientIdentifiers =
              encounter.getPatient().getPatientIdentifiers(pit);

          StringBuffer sbPatientIdentifiers = new StringBuffer();
          int count = 0;
          for (PatientIdentifier patientIdentifier : patientIdentifiers) {
            if (count > 0) {
              sbPatientIdentifiers.append(", ");
            }
            sbPatientIdentifiers.append(patientIdentifier.toString());
            count++;
          }

          DataSetColumn c6 =
              new DataSetColumn(
                  pit.getName(),
                  ObjectUtil.trimStringIfNeeded(pit.getName(), maxColumnHeaderWidth),
                  String.class);
          row.addColumnValue(c6, sbPatientIdentifiers.toString());
        }
      }

      Map<ObsColumnDescriptor, Obs> obsInEncounter = fieldMap.get(encounter);

      // Look up all obs for a given encounter based on column headers for all encounters
      for (ObsColumnDescriptor columnKey : allColumns) {

        Obs obs = obsInEncounter.get(columnKey);
        String columnName = columnKey.format(columnDisplayFormat, maxColumnHeaderWidth);
        DataSetColumn obsDsc = new DataSetColumn(columnName, columnName, String.class);

        StringBuffer columnValue = new StringBuffer();
        if (obs != null && obs.getValueCoded() != null) {
          if (columnDisplayFormat.contains(
              EncounterAndObsDataSetDefinition.ColumnDisplayFormat.ID)) {
            columnValue.append(obs.getValueCoded());
          }

          if (columnDisplayFormat.contains(EncounterAndObsDataSetDefinition.ColumnDisplayFormat.ID)
              && columnDisplayFormat.contains(
                  EncounterAndObsDataSetDefinition.ColumnDisplayFormat.BEST_SHORT_NAME)) {
            columnValue.append("_");
          }

          if (columnDisplayFormat.contains(
              EncounterAndObsDataSetDefinition.ColumnDisplayFormat.BEST_SHORT_NAME)) {
            String conceptName = obs.getValueAsString(Context.getLocale());
            columnValue.append(
                maxColumnHeaderWidth != null
                        && conceptName.length() > maxColumnHeaderWidth - columnValue.length()
                    ? conceptName.substring(0, maxColumnHeaderWidth - columnValue.length() - 1)
                    : conceptName);
          }
          row.addColumnValue(obsDsc, (obs != null) ? columnValue.toString() : EMPTY);
        } else {
          row.addColumnValue(
              obsDsc, (obs != null) ? obs.getValueAsString(Context.getLocale()) : EMPTY);
        }

        String dateColumnName =
            columnKey.format(
                columnDisplayFormat,
                maxColumnHeaderWidth != null ? maxColumnHeaderWidth - 5 : null);
        DataSetColumn obsDscDate =
            new DataSetColumn(dateColumnName + "_DATE", dateColumnName + "_DATE", String.class);
        row.addColumnValue(obsDscDate, (obs != null) ? obs.getObsDatetime().toString() : EMPTY);

        String parentColumnName =
            columnKey.format(
                columnDisplayFormat,
                maxColumnHeaderWidth != null ? maxColumnHeaderWidth - 7 : null);
        DataSetColumn obsDscParent =
            new DataSetColumn(
                parentColumnName + "_PARENT", parentColumnName + "_PARENT", String.class);
        row.addColumnValue(
            obsDscParent,
            (obs != null && obs.getObsGroup() != null) ? obs.getObsGroup().getId() : EMPTY);

        if (optionalColumns != null) {

          if (optionalColumns.contains(
              EncounterAndObsDataSetDefinition.ObsOptionalColumn.VALUE_MODIFIER)) {
            String valModColumnName =
                columnKey.format(
                    columnDisplayFormat,
                    maxColumnHeaderWidth != null ? maxColumnHeaderWidth - 10 : null);
            DataSetColumn obsDscValueModifier =
                new DataSetColumn(
                    valModColumnName + "_VALUE_MOD", valModColumnName + "_VALUE_MOD", String.class);
            row.addColumnValue(obsDscValueModifier, (obs != null) ? obs.getValueModifier() : EMPTY);
          }
          if (optionalColumns.contains(
              EncounterAndObsDataSetDefinition.ObsOptionalColumn.ACCESSION_NUMBER)) {
            String accessionNumColumnName =
                columnKey.format(
                    columnDisplayFormat,
                    maxColumnHeaderWidth != null ? maxColumnHeaderWidth - 14 : null);
            DataSetColumn obsDscAccessionNumber =
                new DataSetColumn(
                    accessionNumColumnName + "_ACCESSION_NUM",
                    accessionNumColumnName + "_ACCESSION_NUM",
                    String.class);
            row.addColumnValue(
                obsDscAccessionNumber, (obs != null) ? obs.getAccessionNumber() : EMPTY);
          }
          if (optionalColumns.contains(
              EncounterAndObsDataSetDefinition.ObsOptionalColumn.COMMENT)) {
            String commentColumnName =
                columnKey.format(
                    columnDisplayFormat,
                    maxColumnHeaderWidth != null ? maxColumnHeaderWidth - 8 : null);
            DataSetColumn obsDscComment =
                new DataSetColumn(
                    commentColumnName + "_COMMENT", commentColumnName + "_COMMENT", String.class);
            row.addColumnValue(obsDscComment, (obs != null) ? obs.getComment() : EMPTY);
          }
        }
      }

      dataSet.addRow(row);
    }
    return dataSet;
  }