/**
* Imports MolgenisPermission from tab/comma delimited File.
*
* @param MolgenisPermissionFile a tab delimited file with MolgenisPermission data.
*/
private static void importMolgenisPermission(Database db, File MolgenisPermissionFile)
throws DatabaseException, IOException, Exception {
logger.debug("trying to import " + MolgenisPermissionFile);
if (!MolgenisPermissionFile.exists()) {
logger.warn("MolgenisPermission.txt file is missing, skipped import");
} else {
// read MolgenisPermission from file
CsvReader reader = new CsvFileReader(MolgenisPermissionFile);
List<MolgenisPermission> molgenisPermissionList =
db.toList(MolgenisPermission.class, reader, Integer.MAX_VALUE); // should have no limit
logger.debug("loaded " + molgenisPermissionList.size() + " MolgenisPermission objects");
// redirect incoming and outgoing fkeys
List<Integer> molgenisPermissionIds = new ArrayList<Integer>(); // also doesn't scale
for (int i = 0;
i < molgenisPermissionList.size();
i++) // sorry, not a real list so need to put back!!
{
MolgenisPermission object = molgenisPermissionList.get(i);
// remember index of this id for incoming fkeys
molgenisPermissionIds.add(object.getId());
// redirect outgoing fkeys
if (object.getRole() != null) object.setRole_Id(molgenisRoleIdMap.get(object.getRole_Id()));
if (object.getEntity() != null)
object.setEntity_Id(molgenisEntityIdMap.get(object.getEntity_Id()));
// add assay back to list
molgenisPermissionList.set(i, object);
}
// add to database
db.add(molgenisPermissionList);
for (int i = 0; i < molgenisPermissionList.size(); i++) {
molgenisPermissionIdMap.put(
molgenisPermissionIds.get(i), molgenisPermissionList.get(i).getId());
}
}
}
