public void testHeadNotPopular() throws Exception {
VersionCounts versionCounts = VersionCounts.make();
VoteBlock vb1 = makeVoteBlock("http://test.com/foo1");
byte[] hash1 = addVersion(vb1, "content 1 for foo1");
byte[] hash2 = addVersion(vb1, "content 2 for foo1");
VoteBlock vb2 = makeVoteBlock("http://test.com/foo1");
addVersion(vb2, "content 1 for foo1");
addVersion(vb2, "content 2 for foo1");
VoteBlock vb3 = makeVoteBlock("http://test.com/foo1");
addVersion(vb3, "content 3 for foo1");
addVersion(vb3, "content 2 for foo1");
versionCounts.vote(vb1, participant1);
versionCounts.vote(vb2, participant2);
versionCounts.vote(vb3, participant3);
Map<ParticipantUserData, HashResult> repairCandidates;
repairCandidates = versionCounts.getRepairCandidates(0);
assertSameElements(
SetUtil.set(participant1, participant2, participant3), repairCandidates.keySet());
repairCandidates = versionCounts.getRepairCandidates(1);
assertSameElements(
SetUtil.set(participant1, participant2, participant3), repairCandidates.keySet());
repairCandidates = versionCounts.getRepairCandidates(2);
assertSameElements(SetUtil.set(participant1, participant2), repairCandidates.keySet());
repairCandidates = versionCounts.getRepairCandidates(3);
assertEmpty(repairCandidates.keySet());
}
public Map<String, PlatformUtil.DF> getRepositoryMap() {
Map<String, PlatformUtil.DF> repoMap = new LinkedMap();
for (String repo : getRepositoryList()) {
repoMap.put(repo, getRepositoryDF(repo));
}
return repoMap;
}
public void testMultipleIdenticalVersions() throws Exception {
VersionCounts versionCounts = VersionCounts.make();
VoteBlock vb1 = makeVoteBlock("http://test.com/foo1");
byte[] hash1 = addVersion(vb1, "content 1 for foo1");
byte[] hash2 = addVersion(vb1, "content 2 for foo1");
VoteBlock vb2 = makeVoteBlock("http://test.com/foo1");
addVersion(vb2, "content 1 for foo1");
addVersion(vb2, "content 1 for foo1");
addVersion(vb2, "content 1 for foo1");
addVersion(vb2, "content 1 for foo1");
addVersion(vb2, "content 2 for foo1");
VoteBlock vb3 = makeVoteBlock("http://test.com/foo1");
addVersion(vb3, "content 1 for foo1");
addVersion(vb3, "content 2 for foo1");
addVersion(vb3, "content 2 for foo1");
addVersion(vb3, "content 2 for foo1");
addVersion(vb3, "content 2 for foo1");
versionCounts.vote(vb1, participant1);
versionCounts.vote(vb2, participant2);
versionCounts.vote(vb3, participant3);
Map<ParticipantUserData, HashResult> repairCandidates;
repairCandidates = versionCounts.getRepairCandidates(2);
assertSameElements(
SetUtil.set(participant1, participant2, participant3), repairCandidates.keySet());
// With only three candidates, no version should reach a threshold
// of 4, unless counting multiples is wrong.
repairCandidates = versionCounts.getRepairCandidates(4);
assertEmpty(repairCandidates.keySet());
}
protected void initFeatureVersions() throws PluginException.InvalidDefinition {
if (definitionMap.containsKey(KEY_PLUGIN_FEATURE_VERSION_MAP)) {
Map<Plugin.Feature, String> map = new HashMap<Plugin.Feature, String>();
Map<String, String> spec =
(Map<String, String>) definitionMap.getMap(KEY_PLUGIN_FEATURE_VERSION_MAP);
log.debug2("features: " + spec);
for (Map.Entry<String, String> ent : spec.entrySet()) {
try {
// Prefix version string with feature name to create separate
// namespace for each feature
String key = ent.getKey();
map.put(Plugin.Feature.valueOf(key), key + "_" + ent.getValue());
} catch (RuntimeException e) {
log.warning(
getPluginName()
+ " set unknown feature: "
+ ent.getKey()
+ " to version "
+ ent.getValue(),
e);
throw new PluginException.InvalidDefinition("Unknown feature: " + ent.getKey(), e);
}
}
featureVersion = map;
} else {
featureVersion = null;
}
}
/** Create LockssKeystores from config subtree below {@link #PARAM_KEYSTORE} */
void configureKeyStores(Configuration config) {
Configuration allKs = config.getConfigTree(PARAM_KEYSTORE);
for (Iterator iter = allKs.nodeIterator(); iter.hasNext(); ) {
String id = (String) iter.next();
Configuration oneKs = allKs.getConfigTree(id);
try {
LockssKeyStore lk = createLockssKeyStore(oneKs);
String name = lk.getName();
if (name == null) {
log.error("KeyStore definition missing name: " + oneKs);
continue;
}
LockssKeyStore old = keystoreMap.get(name);
if (old != null && !lk.equals(old)) {
log.warning(
"Keystore "
+ name
+ " redefined. "
+ "New definition may not take effect until daemon restart");
}
log.debug("Adding keystore " + name);
keystoreMap.put(name, lk);
} catch (Exception e) {
log.error("Couldn't create keystore: " + oneKs, e);
}
}
}
/**
* Return the request parameters as a Map<String,String>. Only the first value of multivalued
* parameters is included.
*/
Map<String, String> getParamsAsMap() {
Map<String, String> map = new HashMap<String, String>();
for (Enumeration en = req.getParameterNames(); en.hasMoreElements(); ) {
String name = (String) en.nextElement();
map.put(name, req.getParameter(name));
}
return map;
}
private Map makeRow(CrawlerStatus status, String mimeType, String key) {
Map row = new HashMap();
row.put(MIME_TYPE_NAME, mimeType);
row.put(
MIME_TYPE_NUM_URLS,
makeRefIfColl(status.getMimeTypeCtr(mimeType), key, MIMETYPES_URLS_KEY + ":" + mimeType));
return row;
}
// Break the line at commas, return a map of the resulting strings
// broken at equals sign. (<i>Ie</i>, name value pairs.)
Map getRow(String line) {
Map map = new HashMap();
for (Iterator iter = StringUtil.breakAt(line, ',').iterator(); iter.hasNext(); ) {
String item = (String) iter.next();
List pair = StringUtil.breakAt(item, '=');
map.put(pair.get(0), pair.get(1));
}
return map;
}
// hack only local
public synchronized LockssRepositoryImpl getRepositoryFromPath(String path) {
LockssRepositoryImpl repo = (LockssRepositoryImpl) localRepos.get(path);
if (repo == null) {
repo = new LockssRepositoryImpl(path);
repo.initService(getDaemon());
repo.startService();
localRepos.put(path, repo);
}
return repo;
}
protected void initAuFeatureMap() {
if (definitionMap.containsKey(DefinableArchivalUnit.KEY_AU_FEATURE_URL_MAP)) {
Map<String, ?> featMap = definitionMap.getMap(DefinableArchivalUnit.KEY_AU_FEATURE_URL_MAP);
for (Map.Entry ent : featMap.entrySet()) {
Object val = ent.getValue();
if (val instanceof Map) {
ent.setValue(MapUtil.expandAlternativeKeyLists((Map) val));
}
}
}
}
void loadKeyStores() {
List<LockssKeyStore> lst = new ArrayList<LockssKeyStore>(keystoreMap.values());
for (LockssKeyStore lk : lst) {
try {
lk.load();
} catch (Exception e) {
log.error("Can't load keystore " + lk.getName(), e);
keystoreMap.remove(lk.getName());
}
}
}
static LocalRepository getLocalRepository(String repoRoot) {
synchronized (localRepositories) {
LocalRepository localRepo = (LocalRepository) localRepositories.get(repoRoot);
if (localRepo == null) {
logger.debug2("Creating LocalRepository(" + repoRoot + ")");
localRepo = new LocalRepository(repoRoot);
localRepositories.put(repoRoot, localRepo);
}
return localRepo;
}
}
public String findLeastFullRepository(Map<String, PlatformUtil.DF> repoMap) {
String mostFree = null;
for (String repo : repoMap.keySet()) {
PlatformUtil.DF df = repoMap.get(repo);
if (df != null) {
if (mostFree == null || (repoMap.get(mostFree)).getAvail() < df.getAvail()) {
mostFree = repo;
}
}
}
return mostFree;
}
/*
* When testing no-pdf-check basic XML parsing, you will get partial MD records
* depending on whether the info comes from dataset.xml or from main.xml
*/
private void validateDatasetMetadataRecord(ArticleMetadata am) {
log.debug3("valideDatasetMetadatRecord");
String doi_val = am.get(MetadataField.FIELD_DOI);
assertEquals(common_issn, am.get(MetadataField.FIELD_ISSN));
log.debug3("doi val is: " + doi_val);
// The dataset doesn't set this value, it'll fail over the main.xml value
if (doi_val.equals("10.1016/S0140-1111(14)61865-1")) {
assertEquals(null, am.get(MetadataField.FIELD_DATE));
} else {
assertEquals(dateMap.get(doi_val), am.get(MetadataField.FIELD_DATE));
}
assertEquals(pubTitleMap.get(doi_val), am.get(MetadataField.FIELD_PUBLICATION_TITLE));
}
static String canonRoot(String root) {
synchronized (canonicalRoots) {
String canon = (String) canonicalRoots.get(root);
if (canon == null) {
try {
canon = new File(root).getCanonicalPath();
canonicalRoots.put(root, canon);
} catch (IOException e) {
logger.warning("Can't canonicalize: " + root, e);
return root;
}
}
return canon;
}
}
/**
* Return the number of TdbTitles in this Tdb.
*
* @return the total TdbTitle count
*/
public int getTdbTitleCount() {
int titleCount = 0;
for (TdbPublisher publisher : tdbPublisherMap.values()) {
titleCount += publisher.getTdbTitleCount();
}
return titleCount;
}
/*
* You will have to tell it the DOI and the schema because those normally come from dataset
*/
private void validateSingleMainMetadataRecord(ArticleMetadata am, String doi_val, String schema) {
log.debug3("valideSingleMainMetadatRecord");
if ("simple-article".equals(schema)) {
assertEquals(common_simple_article_title, am.get(MetadataField.FIELD_ARTICLE_TITLE));
} else {
assertEquals(common_article_title, am.get(MetadataField.FIELD_ARTICLE_TITLE));
}
log.debug3("doi val is: " + doi_val);
assertEquals(authorMap.get(doi_val), am.getList(MetadataField.FIELD_AUTHOR));
assertEquals(volMap.get(doi_val), am.get(MetadataField.FIELD_VOLUME));
assertEquals(issueMap.get(doi_val), am.get(MetadataField.FIELD_ISSUE));
assertEquals("Comment", am.getRaw(ElsevierMainDTD5XmlSchemaHelper.common_dochead));
assertEquals(doi_val, am.getRaw(ElsevierMainDTD5XmlSchemaHelper.common_doi));
assertEquals("2014", am.getRaw(ElsevierMainDTD5XmlSchemaHelper.common_copyright));
}
/**
* Add TdbAus for like (starts with) the specified TdbAu name.
*
* @param tdbAuName the name of the AU to select
* @param tdbAus the collection to add to
* @return <code>true</code> if TdbAus were added to the collection
*/
public boolean getTdbAusLikeName(String tdbAuName, Collection<TdbAu> aus) {
boolean added = false;
for (TdbPublisher publisher : tdbPublisherMap.values()) {
added |= publisher.getTdbAusLikeName(tdbAuName, aus);
}
return added;
}
/**
* Finds the directory for this AU. If none found in the map, designates a new dir for it.
*
* @param auid AU id representing the au
* @param repoRoot path to the root of the repository
* @return the dir String
*/
static String getAuDir(String auid, String repoRoot, boolean create) {
String repoCachePath = extendCacheLocation(repoRoot);
LocalRepository localRepo = getLocalRepository(repoRoot);
synchronized (localRepo) {
Map aumap = localRepo.getAuMap();
String auPathSlash = (String) aumap.get(auid);
if (auPathSlash != null) {
return auPathSlash;
}
if (!create) {
return null;
}
logger.debug3("Creating new au directory for '" + auid + "'.");
String auDir = localRepo.getPrevAuDir();
for (int cnt = RepositoryManager.getMaxUnusedDirSearch(); cnt > 0; cnt--) {
// loop through looking for an available dir
auDir = getNextDirName(auDir);
File testDir = new File(repoCachePath, auDir);
if (logger.isDebug3()) logger.debug3("Probe for unused: " + testDir);
if (!testDir.exists()) {
if (RepositoryManager.isStatefulUnusedDirSearch()) {
localRepo.setPrevAuDir(auDir);
}
String auPath = testDir.toString();
logger.debug3("New au directory: " + auPath);
auPathSlash = auPath + File.separator;
// write the new au property file to the new dir
// XXX this data should be backed up elsewhere to avoid single-point
// corruption
Properties idProps = new Properties();
idProps.setProperty(AU_ID_PROP, auid);
saveAuIdProperties(auPath, idProps);
aumap.put(auid, auPathSlash);
return auPathSlash;
} else {
if (logger.isDebug3()) {
logger.debug3("Existing directory found at '" + auDir + "'. Checking next...");
}
}
}
}
throw new RuntimeException(
"Can't find unused repository dir after "
+ RepositoryManager.getMaxUnusedDirSearch()
+ " tries in "
+ repoCachePath);
}
public void setRepoMap(Map<String, PlatformUtil.DF> repoMap) {
List repos = new ArrayList();
this.repoMap = repoMap;
for (String repo : repoMap.keySet()) {
repos.add(repo);
}
setRepos(repos);
}
/**
* Adds to a collection of TdbTitles like (starts with) the specified title name across all
* publishers.
*
* @param titleName the title name
* @param titles a collection of matching titles
* @return a collection of TdbTitles that match the title name
*/
public boolean getTdbTitlesLikeName(String titleName, Collection<TdbTitle> titles) {
boolean added = false;
if (titleName != null) {
for (TdbPublisher publisher : tdbPublisherMap.values()) {
added |= publisher.getTdbTitlesLikeName(titleName, titles);
}
}
return added;
}
/** Add to a collection of TdbAus for this TDB that match the ISBN. */
public boolean getTdbAusByIsbn(String isbn, Collection<TdbAu> matchingTdbAus) {
boolean added = false;
if (isbn != null) {
for (TdbPublisher tdbPublisher : tdbPublisherMap.values()) {
added |= tdbPublisher.getTdbAusByIsbn(matchingTdbAus, isbn);
}
}
return added;
}
/** If in testing mode FOO, copy values from FOO_override map, if any, to main map */
void processOverrides(TypedEntryMap map) {
String testMode = getTestingMode();
if (StringUtil.isNullString(testMode)) {
return;
}
Object o = map.getMapElement(testMode + DefinableArchivalUnit.SUFFIX_OVERRIDE);
if (o == null) {
return;
}
if (o instanceof Map) {
Map overrideMap = (Map) o;
for (Map.Entry entry : (Set<Map.Entry>) overrideMap.entrySet()) {
String key = (String) entry.getKey();
Object val = entry.getValue();
log.debug(getDefaultPluginName() + ": Overriding " + key + " with " + val);
map.setMapElement(key, val);
}
}
}
/**
* Get the title for the specified titleId.
*
* @param titleId the titleID
* @return the title for the titleId or <code>null</code. if not found
*/
public TdbTitle getTdbTitleById(String titleId) {
if (titleId != null) {
for (TdbPublisher publisher : tdbPublisherMap.values()) {
TdbTitle title = publisher.getTdbTitleById(titleId);
if (title != null) {
return title;
}
}
}
return null;
}
public void testText() throws Exception {
MockStatusAccessor statusAccessor =
MockStatusAccessor.generateStatusAccessor(colArray1, rowArray1);
statusAccessor.setTitle("testtbl", null);
statSvc.registerStatusAccessor("testtbl", statusAccessor);
WebResponse resp = getTable("testtbl", true);
assertResponseOk(resp);
assertEquals("Content type", "text/plain", resp.getContentType());
log.debug(resp.getText());
List lines = getLines(resp);
assertEquals(rowArray1.length + 3, lines.size());
Map row0 = getRow((String) lines.get(0));
assertEquals("2.4.6.8", row0.get("host"));
Map row2 = getRow((String) lines.get(2));
assertEquals("testtbl", row2.get("table"));
assertEqualTables(table1, lines);
}
/**
* Get a title for the specified issn.
*
* @param issn the issn
* @return the title for the titleId or <code>null</code. if not found
*/
public TdbTitle getTdbTitleByIssn(String issn) {
if (issn != null) {
for (TdbPublisher publisher : tdbPublisherMap.values()) {
TdbTitle title = publisher.getTdbTitleByIssn(issn);
if (title != null) {
return title;
}
}
}
return null;
}
public void testHeadNotAllowed() throws Exception {
VersionCounts versionCounts = VersionCounts.make();
VoteBlock vb1 = makeVoteBlock("http://test.com/foo1");
byte[] hash1 = addVersion(vb1, "content 1 for foo1");
byte[] hash2 = addVersion(vb1, "content 2 for foo1");
versionCounts.vote(vb1, participant1);
Map<ParticipantUserData, HashResult> repairCandidates;
repairCandidates = versionCounts.getRepairCandidates(0);
assertSameElements(SetUtil.set(participant1), repairCandidates.keySet());
// Same, but with an excluded version that doesn't matter.
repairCandidates = versionCounts.getRepairCandidates(0, SetUtil.set(HashResult.make(hash2)));
assertSameElements(SetUtil.set(participant1), repairCandidates.keySet());
// Same, but with an excluded version that does matter
repairCandidates = versionCounts.getRepairCandidates(0, SetUtil.set(HashResult.make(hash1)));
assertEmpty(repairCandidates);
}
/**
* Adds a collection of pluginIds for TdbAus that are different from those in this Tdb.
*
* @param pluginIds the set of pluginIds
* @param otherTdb a Tdb
*/
private void addPluginIdsForDifferences(Set<String> pluginIds, Tdb otherTdb) {
Map<String, TdbPublisher> tdbPublishers = otherTdb.getAllTdbPublishers();
for (TdbPublisher tdbPublisher : tdbPublishers.values()) {
if (!this.tdbPublisherMap.containsKey(tdbPublisher.getName())) {
// add pluginIds for publishers in tdb that are not in this Tdb
tdbPublisher.addAllPluginIds(pluginIds);
}
}
for (TdbPublisher thisPublisher : tdbPublisherMap.values()) {
TdbPublisher tdbPublisher = tdbPublishers.get(thisPublisher.getName());
if (tdbPublisher == null) {
// add pluginIds for publisher in this Tdb that is not in tdb
thisPublisher.addAllPluginIds(pluginIds);
} else {
// add pluginIds for publishers in both Tdbs that are different
thisPublisher.addPluginIdsForDifferences(pluginIds, tdbPublisher);
}
}
}
/**
* Add a new TdbAu to this title database. The TdbAu must have its pluginID, and title set. The
* TdbAu''s title must also have its titleId and publisher set. The publisher name must be unique
* to all publishers in this Tdb.
*
* @param au the TdbAu to add.
* @throws TdbException if Tdb is sealed, this is a duplicate au, or the au's publisher is a
* duplicate
*/
public void addTdbAu(TdbAu au) throws TdbException {
if (au == null) {
throw new IllegalArgumentException("TdbAu cannot be null");
}
// verify not sealed
if (isSealed()) {
throw new TdbException("Cannot add TdbAu to sealed Tdb");
}
// validate title
TdbTitle title = au.getTdbTitle();
if (title == null) {
throw new IllegalArgumentException("TdbAu's title not set");
}
// validate publisher
TdbPublisher publisher = title.getTdbPublisher();
if (publisher == null) {
throw new IllegalArgumentException("TdbAu's publisher not set");
}
// make sure publisher is not a duplicate
String pubName = publisher.getName();
TdbPublisher oldPublisher = tdbPublisherMap.put(pubName, publisher);
if ((oldPublisher != null) && (oldPublisher != publisher)) {
// restore old publisher and report error
tdbPublisherMap.put(pubName, oldPublisher);
throw new TdbException("New au publisher with duplicate name: " + pubName);
}
// register the au with this instance
if (!addTdbAuForPlugin(au)) {
// remove new publisher and report error
if (oldPublisher == null) {
tdbPublisherMap.remove(pubName);
}
throw new TdbException("Cannot register au " + au.getName());
}
}
/**
* Return the auid -> au-subdir-path mapping. Enumerating the directories if necessary to
* initialize the map
*/
Map getAuMap() {
if (auMap == null) {
logger.debug3("Loading name map for '" + repoCacheFile + "'.");
auMap = new HashMap();
if (!repoCacheFile.exists()) {
logger.debug3("Creating cache dir:" + repoCacheFile + "'.");
if (!repoCacheFile.mkdirs()) {
logger.critical("Couldn't create directory, check owner/permissions: " + repoCacheFile);
// return empty map
return auMap;
}
} else {
// read each dir's property file and store mapping auid -> dir
File[] auDirs = repoCacheFile.listFiles();
for (int ii = 0; ii < auDirs.length; ii++) {
String dirName = auDirs[ii].getName();
// if (dirName.compareTo(lastPluginDir) == 1) {
// // adjust the 'lastPluginDir' upwards if necessary
// lastPluginDir = dirName;
// }
String path = auDirs[ii].getAbsolutePath();
Properties idProps = getAuIdProperties(path);
if (idProps != null) {
String auid = idProps.getProperty(AU_ID_PROP);
StringBuilder sb = new StringBuilder(path.length() + File.separator.length());
sb.append(path);
sb.append(File.separator);
auMap.put(auid, sb.toString());
logger.debug3("Mapping to: " + auMap.get(auid) + ": " + auid);
} else {
logger.debug3("Not mapping " + path + ", no auid file.");
}
}
}
}
return auMap;
}
