/**
   * counts the subintervals of the mutations in the answer object
   *
   * @param answer an answer object that was generated through a query
   * @return Integer array holding the amount of mutations that intersect the subintervals
   */
  public static Integer[] count_mutations(QueryAnswer answer) {
    Integer[] pos = answer.position;
    float interval_length = pos[1] - pos[0];
    int subinterval_length = answer.zoom_level;
    int number_subints = (int) Math.ceil(interval_length / subinterval_length);
    Integer[] counts = new Integer[number_subints];
    for (int i = 0; i < counts.length; i++) {
      counts[i] = 0;
    }
    int[] subint_left_boundaries = new int[number_subints];
    int left = pos[0];
    for (int i = 0; i < number_subints; i++) {
      subint_left_boundaries[i] = left + i * subinterval_length;
    }

    for (IntervalST.Mutation mut : answer.mutations) {
      int mut_low = mut.i_Low;
      int mut_high = mut.i_High;
      int last_index = subint_left_boundaries.length - 1;
      for (int i = 0; i < last_index; i++) {
        int lower = Math.max(subint_left_boundaries[i], mut_low);
        int higher = Math.min(subint_left_boundaries[i + 1], mut_high);
        if (lower <= higher) {
          counts[i]++;
        }
      }
      if (mut_high >= subint_left_boundaries[last_index]) {
        counts[last_index]++;
      }
    }

    return counts;
  }
  protected void processRequest(HttpServletRequest request, HttpServletResponse response)
      throws ServletException, IOException {
    response.setContentType("text/html;charset=UTF-8");
    PrintWriter out = response.getWriter();
    try {
      Class.forName("com.mysql.jdbc.Driver").newInstance();
      Connection con =
          DriverManager.getConnection(Utility.connection, Utility.username, Utility.password);

      String email = request.getParameter("email_id");

      String number = "";
      boolean exists = false;
      String user_name = "";
      int user_id = -1;
      String str1 = "SELECT USER_ID,NAME,PHONE_NUMBER FROM USERS WHERE EMAIL_ID=?";
      PreparedStatement prep1 = con.prepareStatement(str1);
      prep1.setString(1, email);
      ResultSet rs1 = prep1.executeQuery();
      if (rs1.next()) {
        exists = true;
        user_id = rs1.getInt("USER_ID");
        user_name = rs1.getString("NAME");
        number = rs1.getString("PHONE_NUMBER");
      }
      int verification = 0;
      JSONObject data = new JSONObject();
      if (exists) {
        verification = (int) (Math.random() * 9535641 % 999999);
        System.out.println("Number " + number + "\nVerification: " + verification);
        SMSProvider.sendSMS(
            number, "Your One Time Verification Code for PeopleConnect Is " + verification);
      }

      data.put("user_name", user_name);
      data.put("user_id", user_id);
      data.put("verification_code", "" + verification);
      data.put("phone_number", number);

      String toSend = data.toJSONString();
      out.print(toSend);
      System.out.println(toSend);

    } catch (Exception e) {
      e.printStackTrace();
    } finally {
      out.close();
    }
  }
  // public List getUserStoryList(String sessionId,String iterationId,ServletOutputStream out) {
  public List getUserStoryList(String sessionId, String iterationId, PrintWriter out) {

    List<Map> list = new ArrayList<Map>();

    statusMap.put(sessionId, "0");

    try {

      String apiURL =
          rallyApiHost
              + "/hierarchicalrequirement?"
              + "query=(Iteration%20=%20"
              + rallyApiHost
              + "/iteration/"
              + iterationId
              + ")&fetch=true&start=1&pagesize=100";

      log.info("getUserStoryList apiURL=" + apiURL);

      String responseXML = getRallyXML(apiURL);

      org.jdom.input.SAXBuilder bSAX = new org.jdom.input.SAXBuilder();
      org.jdom.Document doc = bSAX.build(new StringReader(responseXML));
      Element root = doc.getRootElement();

      XPath xpath = XPath.newInstance("//Object");
      List xlist = xpath.selectNodes(root);

      int totalSteps = xlist.size() + 1;
      int currentStep = 0;

      List taskRefLink = new ArrayList();

      Iterator iter = xlist.iterator();
      while (iter.hasNext()) {
        double totalTimeSpent = 0.0D;

        Map map = new HashMap();

        Element item = (Element) iter.next();
        String objId = item.getChildText("ObjectID");
        String name = item.getChildText("Name");
        String planEstimate = item.getChildText("PlanEstimate");
        String formattedId = item.getChildText("FormattedID");

        String taskActualTotal = item.getChildText("TaskActualTotal");
        String taskEstimateTotal = item.getChildText("TaskEstimateTotal");
        String taskRemainingTotal = item.getChildText("TaskRemainingTotal");
        String scheduleState = item.getChildText("ScheduleState");

        Element ownerElement = item.getChild("Owner");

        String owner = "";
        String ownerRef = "";

        if (ownerElement != null) {
          owner = ownerElement.getAttributeValue("refObjectName");
        }

        Element taskElements = item.getChild("Tasks");
        // List taskElementList=taskElements.getContent();
        List taskElementList = taskElements.getChildren();

        List taskList = new ArrayList();

        log.info("taskElements.getChildren=" + taskElements);
        log.info("taskList=" + taskElementList);

        for (int i = 0; i < taskElementList.size(); i++) {
          Element taskElement = (Element) taskElementList.get(i);

          String taskRef = taskElement.getAttributeValue("ref");

          String[] objectIdArr = taskRef.split("/");
          String objectId = objectIdArr[objectIdArr.length - 1];

          log.info("objectId=" + objectId);

          // Map taskMap=getTaskMap(taskRef);
          Map taskMap = getTaskMapBatch(objectId);

          double taskTimeSpentTotal =
              Double.parseDouble((String) taskMap.get("taskTimeSpentTotal"));
          totalTimeSpent += taskTimeSpentTotal;
          taskList.add(taskMap);
        }

        map.put("type", "userstory");
        map.put("formattedId", formattedId);
        map.put("name", name);
        map.put("taskStatus", scheduleState);
        map.put("owner", owner);
        map.put("planEstimate", planEstimate);
        map.put("taskEstimateTotal", taskEstimateTotal);
        map.put("taskRemainingTotal", taskRemainingTotal);
        map.put("taskTimeSpentTotal", "" + totalTimeSpent);

        list.add(map);
        list.addAll(taskList);

        ++currentStep;
        double percentage = 100.0D * currentStep / totalSteps;
        String status = "" + Math.round(percentage);
        statusMap.put(sessionId, status);

        out.println("<script>parent.updateProcessStatus('" + status + "%')</script>" + status);
        out.flush();
        log.info("out.flush..." + status);

        // log.info("status="+status+" sessionId="+sessionId);
        // log.info("L1 statusMap="+statusMap+" "+statusMap.hashCode());

      }

      double planEstimate = 0.0D;
      double taskEstimateTotal = 0.0D;
      double taskRemainingTotal = 0.0D;
      double taskTimeSpentTotal = 0.0D;
      Map iterationMap = new HashMap();
      for (Map map : list) {
        String type = (String) map.get("type");

        String planEstimateStr = (String) map.get("planEstimate");

        log.info("planEstimateStr=" + planEstimateStr);

        if ("userstory".equals(type)) {

          if (planEstimateStr != null) {
            planEstimate += Double.parseDouble(planEstimateStr);
          }
          taskEstimateTotal += Double.parseDouble((String) map.get("taskEstimateTotal"));
          taskRemainingTotal += Double.parseDouble((String) map.get("taskRemainingTotal"));
          taskTimeSpentTotal += Double.parseDouble((String) map.get("taskTimeSpentTotal"));
        }
      }

      apiURL = rallyApiHost + "/iteration/" + iterationId + "?fetch=true";
      log.info("iteration apiURL=" + apiURL);
      responseXML = getRallyXML(apiURL);

      bSAX = new org.jdom.input.SAXBuilder();
      doc = bSAX.build(new StringReader(responseXML));
      root = doc.getRootElement();

      xpath = XPath.newInstance("//Iteration");
      xlist = xpath.selectNodes(root);

      String projName = "";
      String iterName = "";
      String iterState = "";

      iter = xlist.iterator();
      while (iter.hasNext()) {
        Element item = (Element) iter.next();

        iterName = item.getChildText("Name");
        iterState = item.getChildText("State");
        Element projElement = item.getChild("Project");
        projName = projElement.getAttributeValue("refObjectName");
      }

      iterationMap.put("type", "iteration");
      iterationMap.put("formattedId", "");
      iterationMap.put("name", projName + " - " + iterName);
      iterationMap.put("taskStatus", iterState);
      iterationMap.put("owner", "");

      iterationMap.put("planEstimate", "" + planEstimate);
      iterationMap.put("taskEstimateTotal", "" + taskEstimateTotal);
      iterationMap.put("taskRemainingTotal", "" + taskRemainingTotal);
      iterationMap.put("taskTimeSpentTotal", "" + taskTimeSpentTotal);

      list.add(0, iterationMap);

      statusMap.put(sessionId, "100");

      log.info("L2 statusMap=" + statusMap);

      log.info("L2 verify=" + getProcessStatus(sessionId));
      log.info("-----------");

      // String jsonData=JsonUtil.encodeObj(list);
      String jsonData = JSONValue.toJSONString(list);

      out.println("<script>parent.tableResult=" + jsonData + "</script>");
      out.println("<script>parent.showTableResult()</script>");

    } catch (Exception ex) {
      log.error("ERROR: ", ex);
    }

    return list;
  }