/**
* {@inheritDoc}
*
* @see org.jfree.chart.urls.CategoryURLGenerator#generateURL(
* org.jfree.data.category.CategoryDataset, int, int)
*/
public String generateURL(CategoryDataset dataset, int series, int category) {
StringBuffer sb = new StringBuffer("queryForGraphAction.do?bagName=" + bagName);
sb.append("&category=" + dataset.getColumnKey(category));
sb.append("&series=" + dataset.getColumnKey(category));
sb.append("&urlGen=org.intermine.bio.web.widget.HaemAtlasGraphURLGenerator");
return sb.toString();
}
/**
* Creates the array of items that can be passed to the
* <code>MessageFormat</code> class for creating labels.
*
* @param dataset the dataset (<code>null</code> not permitted).
* @param row the row index (zero-based).
* @param column the column index (zero-based).
*
* @return The items (never <code>null</code>).
*/
protected Object[] createItemArray(CategoryDataset dataset,
int row, int column) {
Object[] result = new Object[5];
result[0] = dataset.getRowKey(row).toString();
result[1] = dataset.getColumnKey(column).toString();
Number value = dataset.getValue(row, column);
if (getNumberFormat() != null) {
result[2] = getNumberFormat().format(value);
}
else if (getDateFormat() != null) {
result[2] = getDateFormat().format(value);
}
if (dataset instanceof IntervalCategoryDataset) {
IntervalCategoryDataset icd = (IntervalCategoryDataset) dataset;
Number start = icd.getStartValue(row, column);
Number end = icd.getEndValue(row, column);
if (getNumberFormat() != null) {
result[3] = getNumberFormat().format(start);
result[4] = getNumberFormat().format(end);
}
else if (getDateFormat() != null) {
result[3] = getDateFormat().format(start);
result[4] = getDateFormat().format(end);
}
}
return result;
}
public String generateLabel(CategoryDataset dataset, int series, int category) {
Comparable<?> seriesName = dataset.getRowKey(series);
Map<Comparable<?>, String> labels = labelsMap.get(seriesName);
if (labels != null) {
return labels.get(dataset.getColumnKey(category));
}
return super.generateLabel(dataset, series, category);
}
public String generateToolTip(CategoryDataset dataset, int row, int column) {
String r = dataset.getRowKey(row).toString();
String c = dataset.getColumnKey(column).toString();
String both = r + "," + c;
if (StringUtil.isEmpty(r)) both = c;
if (StringUtil.isEmpty(c)) both = r;
return LabelFormatUtil.format(labelFormat, dataset.getValue(row, column).doubleValue())
+ " ("
+ both
+ ")";
}
/**
* Adds an entity with the specified hotspot, but only if an entity collection is accessible via
* the renderer state.
*
* @param entities the entity collection.
* @param dataset the dataset.
* @param row the row index.
* @param column the column index.
* @param hotspot the hotspot.
*/
protected void addItemEntity(
EntityCollection entities, CategoryDataset dataset, int row, int column, Shape hotspot) {
String tip = null;
CategoryToolTipGenerator tipster = getToolTipGenerator(row, column);
if (tipster != null) {
tip = tipster.generateToolTip(dataset, row, column);
}
String url = null;
CategoryURLGenerator urlster = getItemURLGenerator(row, column);
if (urlster != null) {
url = urlster.generateURL(dataset, row, column);
}
CategoryItemEntity entity =
new CategoryItemEntity(
hotspot, tip, url, dataset, row, dataset.getColumnKey(column), column);
entities.add(entity);
}
/**
* Creates the array of items that can be passed to the {@link MessageFormat} class for creating
* labels.
*
* @param dataset the dataset (<code>null</code> not permitted).
* @param row the row index (zero-based).
* @param column the column index (zero-based).
* @return The items (never <code>null</code>).
*/
protected Object[] createItemArray(CategoryDataset dataset, int row, int column) {
Object[] result = new Object[4];
result[0] = dataset.getRowKey(row).toString();
result[1] = dataset.getColumnKey(column).toString();
Number value = dataset.getValue(row, column);
if (value != null) {
if (this.numberFormat != null) {
result[2] = this.numberFormat.format(value);
} else if (this.dateFormat != null) {
result[2] = this.dateFormat.format(value);
}
} else {
result[2] = this.nullValueString;
}
if (value != null) {
double total = DataUtilities.calculateColumnTotal(dataset, column);
double percent = value.doubleValue() / total;
result[3] = this.percentFormat.format(percent);
}
return result;
}
/**
* Draws the bar for a single (series, category) data item.
*
* @param g2 the graphics device.
* @param state the renderer state.
* @param dataArea the data area.
* @param plot the plot.
* @param domainAxis the domain axis.
* @param rangeAxis the range axis.
* @param dataset the dataset.
* @param row the row index (zero-based).
* @param column the column index (zero-based).
* @param pass the pass index.
*/
public void drawItem(
Graphics2D g2,
CategoryItemRendererState state,
Rectangle2D dataArea,
CategoryPlot plot,
CategoryAxis domainAxis,
ValueAxis rangeAxis,
CategoryDataset dataset,
int row,
int column,
int pass) {
double previous = state.getSeriesRunningTotal();
if (column == dataset.getColumnCount() - 1) {
previous = 0.0;
}
double current = 0.0;
Number n = dataset.getValue(row, column);
if (n != null) {
current = previous + n.doubleValue();
}
state.setSeriesRunningTotal(current);
int categoryCount = getColumnCount();
PlotOrientation orientation = plot.getOrientation();
double rectX = 0.0;
double rectY = 0.0;
RectangleEdge rangeAxisLocation = plot.getRangeAxisEdge();
// Y0
double j2dy0 = rangeAxis.valueToJava2D(previous, dataArea, rangeAxisLocation);
// Y1
double j2dy1 = rangeAxis.valueToJava2D(current, dataArea, rangeAxisLocation);
double valDiff = current - previous;
if (j2dy1 < j2dy0) {
double temp = j2dy1;
j2dy1 = j2dy0;
j2dy0 = temp;
}
// BAR WIDTH
double rectWidth = state.getBarWidth();
// BAR HEIGHT
double rectHeight = Math.max(getMinimumBarLength(), Math.abs(j2dy1 - j2dy0));
Comparable seriesKey = dataset.getRowKey(row);
Comparable categoryKey = dataset.getColumnKey(column);
if (orientation == PlotOrientation.HORIZONTAL) {
rectY =
domainAxis.getCategorySeriesMiddle(
categoryKey, seriesKey, dataset, getItemMargin(), dataArea, RectangleEdge.LEFT);
rectX = j2dy0;
rectHeight = state.getBarWidth();
rectY = rectY - rectHeight / 2.0;
rectWidth = Math.max(getMinimumBarLength(), Math.abs(j2dy1 - j2dy0));
} else if (orientation == PlotOrientation.VERTICAL) {
rectX =
domainAxis.getCategorySeriesMiddle(
categoryKey, seriesKey, dataset, getItemMargin(), dataArea, RectangleEdge.TOP);
rectX = rectX - rectWidth / 2.0;
rectY = j2dy0;
}
Rectangle2D bar = new Rectangle2D.Double(rectX, rectY, rectWidth, rectHeight);
Paint seriesPaint = getFirstBarPaint();
if (column == 0) {
seriesPaint = getFirstBarPaint();
} else if (column == categoryCount - 1) {
seriesPaint = getLastBarPaint();
} else {
if (valDiff < 0.0) {
seriesPaint = getNegativeBarPaint();
} else if (valDiff > 0.0) {
seriesPaint = getPositiveBarPaint();
} else {
seriesPaint = getLastBarPaint();
}
}
if (getGradientPaintTransformer() != null && seriesPaint instanceof GradientPaint) {
GradientPaint gp = (GradientPaint) seriesPaint;
seriesPaint = getGradientPaintTransformer().transform(gp, bar);
}
g2.setPaint(seriesPaint);
g2.fill(bar);
// draw the outline...
if (isDrawBarOutline() && state.getBarWidth() > BAR_OUTLINE_WIDTH_THRESHOLD) {
Stroke stroke = getItemOutlineStroke(row, column);
Paint paint = getItemOutlinePaint(row, column);
if (stroke != null && paint != null) {
g2.setStroke(stroke);
g2.setPaint(paint);
g2.draw(bar);
}
}
CategoryItemLabelGenerator generator = getItemLabelGenerator(row, column);
if (generator != null && isItemLabelVisible(row, column)) {
drawItemLabel(g2, dataset, row, column, plot, generator, bar, (valDiff < 0.0));
}
// add an item entity, if this information is being collected
EntityCollection entities = state.getEntityCollection();
if (entities != null) {
addItemEntity(entities, dataset, row, column, bar);
}
}
/**
* Draw a single data item.
*
* @param g2 the graphics device.
* @param state the renderer state.
* @param dataArea the data plot area.
* @param plot the plot.
* @param domainAxis the domain axis.
* @param rangeAxis the range axis.
* @param dataset the dataset.
* @param row the row index (zero-based).
* @param column the column index (zero-based).
* @param pass the pass index.
*/
@Override
public void drawItem(
Graphics2D g2,
CategoryItemRendererState state,
Rectangle2D dataArea,
CategoryPlot plot,
CategoryAxis domainAxis,
ValueAxis rangeAxis,
CategoryDataset dataset,
int row,
int column,
int pass) {
// do nothing if item is not visible or null
if (!getItemVisible(row, column)) {
return;
}
Number value = dataset.getValue(row, column);
if (value == null) {
return;
}
PlotOrientation orientation = plot.getOrientation();
RectangleEdge axisEdge = plot.getDomainAxisEdge();
int count = dataset.getColumnCount();
float x0 = (float) domainAxis.getCategoryStart(column, count, dataArea, axisEdge);
float x1 = (float) domainAxis.getCategoryMiddle(column, count, dataArea, axisEdge);
float x2 = (float) domainAxis.getCategoryEnd(column, count, dataArea, axisEdge);
x0 = Math.round(x0);
x1 = Math.round(x1);
x2 = Math.round(x2);
if (this.endType == AreaRendererEndType.TRUNCATE) {
if (column == 0) {
x0 = x1;
} else if (column == getColumnCount() - 1) {
x2 = x1;
}
}
double yy1 = value.doubleValue();
double yy0 = 0.0;
if (this.endType == AreaRendererEndType.LEVEL) {
yy0 = yy1;
}
if (column > 0) {
Number n0 = dataset.getValue(row, column - 1);
if (n0 != null) {
yy0 = (n0.doubleValue() + yy1) / 2.0;
}
}
double yy2 = 0.0;
if (column < dataset.getColumnCount() - 1) {
Number n2 = dataset.getValue(row, column + 1);
if (n2 != null) {
yy2 = (n2.doubleValue() + yy1) / 2.0;
}
} else if (this.endType == AreaRendererEndType.LEVEL) {
yy2 = yy1;
}
RectangleEdge edge = plot.getRangeAxisEdge();
float y0 = (float) rangeAxis.valueToJava2D(yy0, dataArea, edge);
float y1 = (float) rangeAxis.valueToJava2D(yy1, dataArea, edge);
float y2 = (float) rangeAxis.valueToJava2D(yy2, dataArea, edge);
float yz = (float) rangeAxis.valueToJava2D(0.0, dataArea, edge);
double labelXX = x1;
double labelYY = y1;
g2.setPaint(getItemPaint(row, column));
g2.setStroke(getItemStroke(row, column));
GeneralPath area = new GeneralPath();
if (orientation == PlotOrientation.VERTICAL) {
area.moveTo(x0, yz);
area.lineTo(x0, y0);
area.lineTo(x1, y1);
area.lineTo(x2, y2);
area.lineTo(x2, yz);
} else if (orientation == PlotOrientation.HORIZONTAL) {
area.moveTo(yz, x0);
area.lineTo(y0, x0);
area.lineTo(y1, x1);
area.lineTo(y2, x2);
area.lineTo(yz, x2);
double temp = labelXX;
labelXX = labelYY;
labelYY = temp;
}
area.closePath();
g2.setPaint(getItemPaint(row, column));
g2.fill(area);
// draw the item labels if there are any...
if (isItemLabelVisible(row, column)) {
drawItemLabel(
g2, orientation, dataset, row, column, labelXX, labelYY, (value.doubleValue() < 0.0));
}
// submit the current data point as a crosshair candidate
int datasetIndex = plot.indexOf(dataset);
updateCrosshairValues(
state.getCrosshairState(),
dataset.getRowKey(row),
dataset.getColumnKey(column),
yy1,
datasetIndex,
x1,
y1,
orientation);
// add an item entity, if this information is being collected
EntityCollection entities = state.getEntityCollection();
if (entities != null) {
addItemEntity(entities, dataset, row, column, area);
}
}
/**
* Generates a label for the specified row.
*
* @param dataset the dataset (<code>null</code> not permitted).
* @param column the column index (zero-based).
* @return The label.
*/
public String generateColumnLabel(CategoryDataset dataset, int column) {
return dataset.getColumnKey(column).toString();
}
// copied and modified from jfreechart-1.0.14 org.jfree.chart.renderer.category.BarRenderer
private void drawItemInternal(
Graphics2D g2,
CategoryItemRendererState state,
Rectangle2D dataArea,
CategoryPlot plot,
CategoryAxis domainAxis,
ValueAxis rangeAxis,
CategoryDataset dataset,
int row,
int column,
int pass) {
// nothing is drawn if the row index is not included in the list with
// the indices of the visible rows...
int visibleRow = state.getVisibleSeriesIndex(row);
if (visibleRow < 0) {
return;
}
// nothing is drawn for null values...
Number dataValue = dataset.getValue(row, column);
if (dataValue == null) {
return;
}
final double value = dataValue.doubleValue();
PlotOrientation orientation = plot.getOrientation();
double barW0 =
calculateBarW0(plot, orientation, dataArea, domainAxis, state, visibleRow, column);
double[] barL0L1 = calculateBarL0L1(value);
if (barL0L1 == null) {
return; // the bar is not visible
}
RectangleEdge edge = plot.getRangeAxisEdge();
double transL0 = rangeAxis.valueToJava2D(barL0L1[0], dataArea, edge);
double transL1 = rangeAxis.valueToJava2D(barL0L1[1], dataArea, edge);
// in the following code, barL0 is (in Java2D coordinates) the LEFT
// end of the bar for a horizontal bar chart, and the TOP end of the
// bar for a vertical bar chart. Whether this is the BASE of the bar
// or not depends also on (a) whether the data value is 'negative'
// relative to the base value and (b) whether or not the range axis is
// inverted. This only matters if/when we apply the minimumBarLength
// attribute, because we should extend the non-base end of the bar
boolean positive = (value >= this.getBase());
boolean inverted = rangeAxis.isInverted();
double barL0 = Math.min(transL0, transL1);
double barLength = Math.abs(transL1 - transL0);
double barLengthAdj = 0.0;
if (barLength > 0.0 && barLength < getMinimumBarLength()) {
barLengthAdj = getMinimumBarLength() - barLength;
}
double barL0Adj = 0.0;
RectangleEdge barBase;
if (orientation == PlotOrientation.HORIZONTAL) {
if (positive && inverted || !positive && !inverted) {
barL0Adj = barLengthAdj;
barBase = RectangleEdge.RIGHT;
} else {
barBase = RectangleEdge.LEFT;
}
} else {
if (positive && !inverted || !positive && inverted) {
barL0Adj = barLengthAdj;
barBase = RectangleEdge.BOTTOM;
} else {
barBase = RectangleEdge.TOP;
}
}
// draw the bar...
RectangularShape bar = null;
if (orientation == PlotOrientation.HORIZONTAL) {
bar =
getBarShape(
row, barL0 - barL0Adj, barW0, barLength + barLengthAdj, state.getBarWidth());
} else {
bar =
getBarShape(
row, barW0, barL0 - barL0Adj, state.getBarWidth(), barLength + barLengthAdj);
}
if (getShadowsVisible()) {
this.getBarPainter().paintBarShadow(g2, this, row, column, bar, barBase, true);
}
this.getBarPainter().paintBar(g2, this, row, column, bar, barBase);
// FIXME
// CategoryItemLabelGenerator generator = getItemLabelGenerator(row,
// column);
// if (generator != null && isItemLabelVisible(row, column)) {
// drawItemLabel(g2, dataset, row, column, plot, generator, bar,
// (value < 0.0));
// }
// submit the current data point as a crosshair candidate
int datasetIndex = plot.indexOf(dataset);
updateCrosshairValues(
state.getCrosshairState(),
dataset.getRowKey(row),
dataset.getColumnKey(column),
value,
datasetIndex,
barW0,
barL0,
orientation);
// add an item entity, if this information is being collected
EntityCollection entities = state.getEntityCollection();
if (entities != null) {
addItemEntity(entities, dataset, row, column, bar);
}
}