public void checkConditions(List<String> errors, Map<String, Long> dates) throws Exception {
Utilities.checkFolder(srcDir, errors);
Utilities.checkFolder(termDir, errors);
Utilities.checkFolder(imgDir, errors);
this.dates = dates;
checkFile("required", termDir, "bindings.xml", errors, "all");
checkFile("required", dtDir, "primitives.xml", errors, "all");
for (String n : ini.getPropertyNames("types"))
if (ini.getStringProperty("types", n).equals("")) {
TypeRef t = new TypeParser().parse(n).get(0);
checkFile("type definition", dtDir, t.getName().toLowerCase() + ".xml", errors, "all");
}
for (String n : ini.getPropertyNames("structures"))
checkFile("structure definition", dtDir, n.toLowerCase() + ".xml", errors, "all");
String[] shared = ini.getPropertyNames("shared");
if (shared != null)
for (String n : shared)
checkFile("shared structure definition", dtDir, n.toLowerCase() + ".xml", errors, "all");
for (String n : ini.getPropertyNames("infrastructure"))
checkFile("infrastructure definition", dtDir, n.toLowerCase() + ".xml", errors, "all");
for (String n : ini.getPropertyNames("resources")) {
if (!new File(srcDir + n).exists()) errors.add("unable to find folder for resource " + n);
else {
if (new CSFile(srcDir + n + File.separatorChar + n + "-spreadsheet.xml").exists()) {
checkFile(
"definition", srcDir + n + File.separatorChar, n + "-spreadsheet.xml", errors, n);
} else checkFile("definition", srcDir + n + File.separatorChar, n + "-def.xml", errors, n);
checkFile("example xml", srcDir + n + File.separatorChar, n + "-example.xml", errors, n);
// now iterate all the files in the directory checking data
for (String fn : new File(srcDir + n + File.separatorChar).list())
checkFile("source", srcDir + n + File.separatorChar, fn, errors, n);
}
}
for (String n : ini.getPropertyNames("special-resources")) {
if (new CSFile(srcDir + n + File.separatorChar + n + "-spreadsheet.xml").exists())
checkFile("definition", srcDir + n + File.separatorChar, n + "-spreadsheet.xml", errors, n);
else checkFile("definition", srcDir + n + File.separatorChar, n + "-def.xml", errors, n);
// now iterate all the files in the directory checking data
for (String fn : new File(srcDir + n + File.separatorChar).list())
checkFile("source", srcDir + n + File.separatorChar, fn, errors, n);
}
}
public void parse(Calendar genDate, String version) throws Exception {
logger.log("Loading", LogMessageType.Process);
eCoreParseResults = DefinitionsImpl.build(genDate.getTime(), version);
loadGlobalConceptDomains();
eCoreParseResults
.getBinding()
.addAll(
sortBindings(
BindingConverter.buildBindingsFromFhirModel(
definitions.getBindings().values(), null)));
loadPrimitives();
eCoreParseResults
.getPrimitive()
.addAll(
PrimitiveConverter.buildPrimitiveTypesFromFhirModel(
definitions.getPrimitives().values()));
for (String n : ini.getPropertyNames("removed-resources"))
definitions.getDeletedResources().add(n);
for (String n : ini.getPropertyNames("types")) loadCompositeType(n, definitions.getTypes());
for (String n : ini.getPropertyNames("structures"))
loadCompositeType(n, definitions.getStructures());
String[] shared = ini.getPropertyNames("shared");
if (shared != null)
for (String n : shared)
definitions.getShared().add(loadCompositeType(n, definitions.getStructures()));
for (String n : ini.getPropertyNames("infrastructure"))
loadCompositeType(n, definitions.getInfrastructure());
List<TypeDefn> allFhirComposites = new ArrayList<TypeDefn>();
allFhirComposites.add(CompositeTypeConverter.buildElementBaseType());
allFhirComposites.addAll(
PrimitiveConverter.buildCompositeTypesForPrimitives(eCoreParseResults.getPrimitive()));
allFhirComposites.addAll(
CompositeTypeConverter.buildCompositeTypesFromFhirModel(
definitions.getTypes().values(), null));
allFhirComposites.addAll(
CompositeTypeConverter.buildCompositeTypesFromFhirModel(
definitions.getStructures().values(), null));
List<CompositeTypeDefn> infra =
CompositeTypeConverter.buildCompositeTypesFromFhirModel(
definitions.getInfrastructure().values(), null);
for (CompositeTypeDefn composite : infra) composite.setInfrastructure(true);
allFhirComposites.addAll(infra);
allFhirComposites.addAll(
ConstrainedTypeConverter.buildConstrainedTypesFromFhirModel(
definitions.getConstraints().values(), definitions.getConstraintInvariants()));
eCoreParseResults.getType().addAll(sortTypes(allFhirComposites));
for (String n : ini.getPropertyNames("resources"))
loadResource(n, definitions.getResources(), false);
ResourceDefn baseResource = loadResource("resource", null, false);
baseResource.setAbstract(true);
definitions.setBaseResource(baseResource);
loadCompartments();
loadStatusCodes();
org.hl7.fhir.definitions.ecore.fhir.ResourceDefn eCoreBaseResource =
CompositeTypeConverter.buildResourceFromFhirModel(baseResource, null);
eCoreBaseResource.getElement().add(CompositeTypeConverter.buildInternalIdElement());
eCoreParseResults.getType().add(eCoreBaseResource);
eCoreParseResults
.getType()
.addAll(
sortTypes(
CompositeTypeConverter.buildResourcesFromFhirModel(
definitions.getResources().values())));
eCoreParseResults.getType().add(CompositeTypeConverter.buildBinaryResourceDefn());
for (String n : ini.getPropertyNames("svg"))
definitions.getDiagrams().put(n, ini.getStringProperty("svg", n));
if (ini.getPropertyNames("future-resources") != null)
for (String n : ini.getPropertyNames("future-resources")) {
DefinedCode cd =
new DefinedCode(ini.getStringProperty("future-resources", n), "Yet to be defined", n);
definitions.getKnownResources().put(n, cd);
ResourceDefn futureResource = new ResourceDefn();
futureResource.setName(cd.getCode());
futureResource.setDefinition("Future resource " + cd.getCode() + ". As yet undefined.");
futureResource.setForFutureUse(true);
definitions.getFutureResources().put(cd.getCode(), futureResource);
}
eCoreParseResults
.getType()
.addAll(
CompositeTypeConverter.buildResourcesFromFhirModel(
definitions.getFutureResources().values()));
eCoreParseResults
.getEvent()
.addAll(EventConverter.buildEventsFromFhirModel(definitions.getEvents().values()));
// As a second pass, resolve typerefs to the types
fixTypeRefs(eCoreParseResults);
eCoreParseResults
.getBinding()
.add(BindingConverter.buildResourceTypeBinding(eCoreParseResults));
for (String n : ini.getPropertyNames("special-resources"))
definitions.getAggregationEndpoints().add(n);
String[] pn = ini.getPropertyNames("valuesets");
if (pn != null)
for (String n : pn) {
loadValueSet(n);
}
for (String n : ini.getPropertyNames("profiles")) {
loadProfile(n, definitions.getProfiles());
}
for (ResourceDefn r : definitions.getResources().values()) {
for (RegisteredProfile p : r.getProfiles()) {
SpreadsheetParser sparser =
new SpreadsheetParser(
new CSFileInputStream(p.getFilepath()),
p.getName(),
definitions,
srcDir,
logger,
registry);
sparser.setFolder(Utilities.getDirectoryForFile(p.getFilepath()));
p.setProfile(sparser.parseProfile(definitions));
}
}
}