private void gen(TypeDefn t) throws Exception {
Section section = section(t.getName());
if (t.getTypes().isEmpty()) section.triple("fhir:" + t.getName(), "a", "rdfs:Class");
else section.triple("fhir:" + t.getName(), "rdfs:subClassOf", "fhir:Element");
section.label("fhir:" + t.getName(), t.getShortDefn());
section.comment("fhir:" + t.getName(), t.getDefinition());
if (t.getName().equals("Reference"))
section.triple(
"fhir:" + t.getName(),
"a",
"fhir:Resource"); // This is so that a reference can be replaced by a direct reference to
// it's target
nilInstance.predicate("a", "fhir:" + t.getName());
processMappings(section, "fhir:" + t.getName(), t);
for (ElementDefn e : t.getElements()) {
if (e.getName().endsWith("[x]")) {
String cn = e.getName().substring(0, e.getName().length() - 3);
section.triple("fhir:" + t.getName() + "." + cn, "a", "rdf:Property");
section.label("fhir:" + t.getName() + "." + cn, e.getShortDefn());
section.comment("fhir:" + t.getName() + "." + cn, e.getDefinition());
processMappings(section, "fhir:" + t.getName() + "." + cn, e);
for (TypeRef tr : e.typeCode().equals("*") ? getAnyTypes() : e.getTypes()) {
String en = cn + Utilities.capitalize(tr.getName());
section.triple(
"fhir:" + t.getName() + "." + en,
"rdfs:subPropertyOf",
"fhir:" + t.getName() + "." + cn);
section.triple("fhir:" + t.getName() + "." + en, "rdfs:domain", "fhir:" + t.getName());
genRange(section, t.getName(), en, e, tr, true);
}
} else {
section.triple("fhir:" + t.getName() + "." + e.getName(), "a", "rdf:Property");
section.comment("fhir:" + t.getName() + "." + e.getName(), e.getDefinition());
section.triple(
"fhir:" + t.getName() + "." + e.getName(), "rdfs:domain", "fhir:" + t.getName());
processMappings(section, "fhir:" + t.getName() + "." + e.getName(), e);
genRange(
section,
t.getName(),
e.getName(),
e,
e.getTypes().isEmpty() ? null : e.getTypes().get(0),
true);
}
}
processAnonTypes();
}
private void gen(ResourceDefn rd) throws Exception {
Section section = section(rd.getName());
ElementDefn t = rd.getRoot();
if (t.getTypes().isEmpty()) section.triple("fhir:" + t.getName(), "a", "rdfs:Class");
else section.triple("fhir:" + t.getName(), "rdfs:subClassOf", processType(t.typeCode()));
section.comment("fhir:" + t.getName(), rd.getDefinition());
if (!Utilities.noString(t.getW5()))
section.triple(
"fhir:" + t.getName(), "fhir:w5", complex().predicate("a", "fhir:w5\\#" + t.getW5()));
processMappings(section, "fhir:" + rd.getName(), rd.getRoot());
for (ElementDefn e : t.getElements()) {
if (e.getName().endsWith("[x]")) {
String cn = e.getName().substring(0, e.getName().length() - 3);
section.triple("fhir:" + t.getName() + "." + cn, "a", "rdf:Property");
section.comment("fhir:" + t.getName() + "." + cn, e.getDefinition());
processMappings(section, "fhir:" + t.getName() + "." + cn, e);
for (TypeRef tr : e.typeCode().equals("*") ? getAnyTypes() : e.getTypes()) {
String en = cn + Utilities.capitalize(tr.getName());
section.triple(
"fhir:" + t.getName() + "." + en,
"rdfs:subPropertyOf",
"fhir:" + t.getName() + "." + cn);
section.triple("fhir:" + t.getName() + "." + en, "rdfs:domain", "fhir:" + rd.getName());
genRange(section, t.getName(), en, e, tr, false);
}
} else {
section.triple("fhir:" + t.getName() + "." + e.getName(), "a", "rdf:Property");
section.comment("fhir:" + t.getName() + "." + e.getName(), e.getDefinition());
section.triple(
"fhir:" + t.getName() + "." + e.getName(), "rdfs:domain", "fhir:" + rd.getName());
processMappings(section, "fhir:" + t.getName() + "." + e.getName(), e);
genRange(
section,
t.getName(),
e.getName(),
e,
e.getTypes().isEmpty() ? null : e.getTypes().get(0),
false);
}
}
processAnonTypes();
}
private void genAnon(AnonTypeInfo at) throws Exception {
if (at.isType()) at.getSection().triple("fhir:" + at.getName(), "a", "fhir:Element");
else at.getSection().triple("fhir:" + at.getName(), "a", "fhir:BackboneElement");
at.getSection().comment("fhir:" + at.getName(), at.getDefn().getDefinition());
processMappings(at.getSection(), "fhir:" + at.getName(), at.getDefn());
for (ElementDefn e : at.getDefn().getElements()) {
if (e.getName().endsWith("[x]")) {
String cn = e.getName().substring(0, e.getName().length() - 3);
at.getSection().triple("fhir:" + at.getName() + "." + cn, "a", "rdf:Property");
at.getSection().comment("fhir:" + at.getName() + "." + cn, e.getDefinition());
processMappings(at.getSection(), "fhir:" + at.getName() + "." + cn, e);
for (TypeRef tr : e.typeCode().equals("*") ? getAnyTypes() : e.getTypes()) {
String en = cn + Utilities.capitalize(tr.getName());
at.getSection()
.triple(
"fhir:" + at.getName() + "." + en,
"rdfs:subPropertyOf",
"fhir:" + at.getName() + "." + cn);
at.getSection()
.triple("fhir:" + at.getName() + "." + en, "rdfs:domain", "fhir:" + at.getName());
genRange(at.getSection(), at.getName(), en, e, tr, at.isType());
}
} else {
at.getSection().triple("fhir:" + at.getName() + "." + e.getName(), "a", "rdf:Property");
at.getSection().comment("fhir:" + at.getName() + "." + e.getName(), e.getDefinition());
processMappings(at.getSection(), "fhir:" + at.getName() + "." + e.getName(), e);
at.getSection()
.triple(
"fhir:" + at.getName() + "." + e.getName(), "rdfs:domain", "fhir:" + at.getName());
genRange(
at.getSection(),
at.getName(),
e.getName(),
e,
e.getTypes().isEmpty() ? null : e.getTypes().get(0),
at.isType());
}
}
}
private void genRange(
Section section, String tn, String en, ElementDefn e, TypeRef tr, boolean datatype)
throws Exception {
// metadata
if (e.isModifier())
section.triple(
"fhir:" + tn + "." + en, "fhir:hasFlag", complex().predicate("a", "fhir:isModifier"));
if (e.isXmlAttribute())
section.triple(
"fhir:" + tn + "." + en, "fhir:hasFlag", complex().predicate("a", "fhir:isXmlAtribute"));
if (e.hasMustSupport() && e.isMustSupport())
section.triple(
"fhir:" + tn + "." + en, "fhir:hasFlag", complex().predicate("a", "fhir:isMustSupport"));
if (e.hasSummaryItem() && e.isSummaryItem())
section.triple(
"fhir:" + tn + "." + en, "fhir:hasFlag", complex().predicate("a", "fhir:isSummaryItem"));
if (!Utilities.noString(e.getW5()))
section.triple(
"fhir:" + tn + "." + en, "fhir:w5", complex().predicate("a", "fhir:w5\\#" + e.getW5()));
if (e.hasMeaningWhenMissing())
section.triple(
"fhir:" + tn + "." + en, "fhir:missingMeaning", literal(e.getMeaningWhenMissing()));
// cardinality
cardinality(
section,
"fhir:" + tn + "." + en,
e.getMinCardinality().toString(),
e.getMaxCardinality() == Integer.MAX_VALUE ? "*" : e.getMaxCardinality().toString());
// section.triple("fhir:"+tn+"."+en, "fhir:minCardinality",
// literal(e.getMinCardinality().toString()));
// section.triple("fhir:"+tn+"."+en, "fhir:maxCardinality", literal(e.getMaxCardinality() ==
// Integer.MAX_VALUE ? "*" : e.getMaxCardinality().toString()));
// now in OWL:
if (e.getMinCardinality() > 0)
section.triple(
"fhir:" + tn,
"rdfs:subClassOf",
complex()
.predicate("a", "owl:Restriction")
.predicate("owl:onProperty", "fhir:" + tn + "." + en)
.predicate(
"owl:minCardinality",
literalTyped(e.getMinCardinality().toString(), "nonNegativeInteger")));
if (e.getMaxCardinality() < Integer.MAX_VALUE)
section.triple(
"fhir:" + tn,
"rdfs:subClassOf",
complex()
.predicate("a", "owl:Restriction")
.predicate("owl:onProperty", "fhir:" + tn + "." + en)
.predicate(
"owl:maxCardinality",
literalTyped(e.getMaxCardinality().toString(), "nonNegativeInteger")));
// define
if (tr == null) {
section.triple("fhir:" + tn + "." + en, "rdfs:range", "fhir:" + e.getDeclaredTypeName());
anonTypes.push(new AnonTypeInfo(section, e.getDeclaredTypeName(), e, datatype));
} else if (tr.getName().startsWith("@")) {
ElementDefn r = getElementForPath(tr.getName().substring(1));
section.triple("fhir:" + tn + "." + en, "rdfs:range", "fhir:" + r.getDeclaredTypeName());
} else {
if (e.hasBinding()) {
BindingSpecification bs = e.getBinding();
if (bs.getValueSet() != null) {
String bn = getPNameForUri(bs.getValueSet().getUrl());
section.triple("fhir:" + tn + "." + en, "rdfs:range", processType(tr.getName()));
section.triple("fhir:" + tn + "." + en, "fhir:binding", bn);
if (!bn.startsWith("vs:")) // a v3 valueset
valuesets.put(bn, bs.getValueSet());
} else if (!Utilities.noString(bs.getReference())) {
section.triple("fhir:" + tn + "." + en, "rdfs:range", processType(tr.getName()));
section.triple("fhir:" + tn + "." + en, "fhir:binding", "<" + bs.getReference() + ">");
}
// if (bs.hasMax())
// need to figure out how this should be represented in Turtle
section.triple(
"fhir:" + tn + "." + en,
"fhir:bindingStrength",
complex().predicate("a", "fhir:binding-strength\\#" + bs.getStrength().toCode()));
} else section.triple("fhir:" + tn + "." + en, "rdfs:range", processType(tr.getName()));
}
if (e.getDefaultValue() != null) {
if (e.getDefaultValue() instanceof DecimalType)
section.triple(
"fhir:" + tn + "." + en,
"fhir:default",
complex()
.predicate("a", "fhir:decimal")
.predicate(
"fhir:value", literal(((DecimalType) e.getDefaultValue()).asStringValue())));
else if (e.getDefaultValue() instanceof BooleanType)
section.triple(
"fhir:" + tn + "." + en,
"fhir:default",
complex()
.predicate("a", "fhir:boolean")
.predicate(
"fhir:value", literal(((BooleanType) e.getDefaultValue()).asStringValue())));
else if (e.getDefaultValue() instanceof IntegerType)
section.triple(
"fhir:" + tn + "." + en,
"fhir:default",
complex()
.predicate("a", "fhir:integer")
.predicate(
"fhir:value", literal(((IntegerType) e.getDefaultValue()).asStringValue())));
else if (e.getDefaultValue() instanceof CodeType)
section.triple(
"fhir:" + tn + "." + en,
"fhir:default",
complex()
.predicate("a", "fhir:integer")
.predicate(
"fhir:value", literal(((CodeType) e.getDefaultValue()).asStringValue())));
else
throw new Error(
"default of type " + e.getDefaultValue().getClass().getName() + " not handled yet");
}
}