private void applyCustomGraphicsPosition(
final VisualProperty<?> vp, final ObjectPosition position) {
// No need to modify
if (position == null) return;
// Use dependency to retrieve its parent.
final VisualLexiconNode lexNode = lexicon.getVisualLexiconNode(vp);
final Collection<VisualLexiconNode> leavs = lexNode.getParent().getChildren();
VisualProperty<?> parent = null;
for (VisualLexiconNode vlNode : leavs) {
if (vlNode.getVisualProperty().getRange().getType().equals(CyCustomGraphics.class)) {
parent = vlNode.getVisualProperty();
break;
}
}
if (parent == null)
throw new NullPointerException(
"Associated Custom Graphics VP is missing for " + vp.getDisplayName());
final Set<CustomGraphicLayer> currentCG = cgMap.get(parent);
if (currentCG == null || currentCG.size() == 0) return;
final Set<CustomGraphicLayer> newList = new HashSet<CustomGraphicLayer>();
for (CustomGraphicLayer g : currentCG)
newList.add(moveCustomGraphicsToNewPosition(g, position));
currentCG.clear();
currentCG.addAll(newList);
this.cgMap.put(parent, currentCG);
}
/**
* @param netView
* @param view a View<CyNode>, View<CyEdge> or View<CyNetwork> object
* @return
*/
public CyMenuItem build(final CyNetworkView netView, final View<? extends CyIdentifiable> view) {
final Class<? extends CyIdentifiable> targetClass = view.getModel().getClass();
final Queue<VisualLexiconNode> queue =
new PriorityQueue<VisualLexiconNode>(50, new VisualLexiconNodeComparator());
final Map<VisualLexiconNode, JMenuItem> menuMap = new HashMap<VisualLexiconNode, JMenuItem>();
final JMenu rootJMenu = new JMenu(ROOT_MENU_LABEL);
final CyMenuItem rootMenu = new CyMenuItem(rootJMenu, ROOT_GRAVITY);
queue.addAll(root.getChildren());
menuMap.put(root, rootMenu.getMenuItem());
// Node size, width and height
JMenuItem menuItemNodeSize = null;
JMenuItem menuItemNodeWidth = null;
JMenuItem menuItemNodeHeight = null;
final Set<VisualLexiconNode> nextNodes = new HashSet<VisualLexiconNode>();
while (!queue.isEmpty()) {
final VisualLexiconNode curretNode = queue.poll();
final VisualProperty<?> vp = curretNode.getVisualProperty();
if (vp.getTargetDataType().isAssignableFrom(targetClass)) {
final Collection<VisualLexiconNode> children = curretNode.getChildren();
nextNodes.addAll(children);
final JMenuItem menu;
if (children.isEmpty() && PropertySheetUtil.isCompatible(vp)) {
final boolean lock = view.isDirectlyLocked(vp);
if (lock) {
menu = new JMenu(vp.getDisplayName());
final JMenuItem clear = new JMenuItem("Clear");
clear.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
view.clearValueLock(vp);
netView.updateView();
}
});
final JMenuItem edit = new JMenuItem("Edit Bypass");
edit.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
applBypassValue(netView, view, vp);
}
});
menu.add(clear);
menu.add(edit);
// Update color
menu.setForeground(ENABLED_COLOR);
menu.setIcon(ENABLED_ICON);
menu.setFont(ENABLED_FONT);
VisualLexiconNode parent = curretNode.getParent();
while (parent != root) {
JMenuItem enabledPath = menuMap.get(parent);
enabledPath.setForeground(ENABLED_COLOR);
enabledPath.setIcon(ENABLED_ICON);
enabledPath.setFont(ENABLED_FONT);
parent = parent.getParent();
}
rootJMenu.setIcon(ENABLED_ICON);
rootJMenu.setForeground(ENABLED_COLOR);
rootJMenu.setFont(ENABLED_FONT);
vpSet.add(vp);
} else {
menu = new JMenuItem(vp.getDisplayName());
menu.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
applBypassValue(netView, view, vp);
}
});
if (vp.getDisplayName()
.equalsIgnoreCase(BasicVisualLexicon.NODE_WIDTH.getDisplayName())) {
menuItemNodeWidth = menu;
}
if (vp.getDisplayName()
.equalsIgnoreCase(BasicVisualLexicon.NODE_HEIGHT.getDisplayName())) {
menuItemNodeHeight = menu;
}
}
} else {
menu = new JMenu(vp.getDisplayName());
if (vp.getDisplayName().equalsIgnoreCase(BasicVisualLexicon.NODE_SIZE.getDisplayName())) {
menuItemNodeSize = menu;
vp_nodeSize = vp;
}
}
if (PropertySheetUtil.isCompatible(vp)) {
menuMap.get(curretNode.getParent()).add(menu);
menuMap.put(curretNode, menu);
}
}
if (queue.isEmpty()) {
queue.addAll(nextNodes);
nextNodes.clear();
}
}
// handle node size
if (menuItemNodeSize != null) {
//
JMenuItem menuItemNodeSize1 = new JMenuItem(vp_nodeSize.getDisplayName());
menuItemNodeSize1.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
applBypassValue(netView, view, vp_nodeSize);
}
});
menuItemNodeSize.add(menuItemNodeSize1);
// Check if nose size is locked
boolean nodeSizeIsLocked = false;
java.util.Iterator it =
vmm.getCurrentVisualStyle().getAllVisualPropertyDependencies().iterator();
while (it.hasNext()) {
org.cytoscape.view.vizmap.VisualPropertyDependency dep =
(org.cytoscape.view.vizmap.VisualPropertyDependency) it.next();
if (dep.getDisplayName().equalsIgnoreCase("Lock node width and height")
&& dep.isDependencyEnabled()) {
nodeSizeIsLocked = true;
}
}
if (nodeSizeIsLocked) {
// In case the Node size is locked, disable menuItem Node_width and Nod_height
if (menuItemNodeWidth != null) menuItemNodeWidth.setEnabled(false);
if (menuItemNodeHeight != null) menuItemNodeHeight.setEnabled(false);
} else {
// In case the Node size is not locked, disable menuItem Node_size
if (menuItemNodeSize1 != null) menuItemNodeSize1.setEnabled(false);
}
}
final JSeparator separator = new JSeparator();
final JMenuItem resetMenu = new JMenuItem("Reset All");
resetMenu.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
clearAll(netView, view);
}
});
rootJMenu.add(separator);
rootJMenu.add(resetMenu);
return rootMenu;
}