/** {@inheritDoc} */ @Override public Evidence[] mapEdgeToEvidence(Graph graph, Edge edge) { if (graph == null) throw new NullPointerException("graph cannot be null"); if (edge == null) throw new NullPointerException("edge cannot be null"); if (edge.metadata == null) return new Evidence[0]; Object evidences = edge.metadata.get("evidences"); if (evidences == null || !(evidences instanceof List)) return new Evidence[0]; List<Map> evidenceMap = typedList(((List) evidences), Map.class); List<Evidence> evidenceList = new ArrayList<Evidence>(); for (Map item : evidenceMap) { @SuppressWarnings("unchecked") Map<String, Object> evMap = (Map<String, Object>) item; Evidence ev = new Evidence(); ev.belStatement = getOrEmptyString("bel_statement", evMap).replace("\\\"", "\""); ev.summaryText = getOrEmptyString("summary_text", evMap); Citation citation = new Citation(); @SuppressWarnings("unchecked") Map<String, Object> citationMap = (Map<String, Object>) evMap.get("citation"); if (citationMap != null) { citation.id = getOrEmptyString("id", citationMap); citation.type = getOrEmptyString("type", citationMap); citation.name = getOrEmptyString("name", citationMap); } ev.citation = citation; BiologicalContext context = new BiologicalContext(); @SuppressWarnings("unchecked") Map<String, Object> contextMap = (Map<String, Object>) evMap.get("biological_context"); if (contextMap != null) { context.speciesCommonName = getOrEmptyString("species_common_name", contextMap); context.ncbiTaxId = getOrZero("ncbi_tax_id", contextMap); Set<String> varying = new HashSet<String>(contextMap.keySet()); varying.removeAll(asList("species_common_name", "ncbi_tax_id")); for (String key : varying) { context.variedAnnotations.put(key, contextMap.get(key)); } ev.biologicalContext = context; } evidenceList.add(ev); } return evidenceList.toArray(new Evidence[evidenceList.size()]); }