/**
* Gets the Interaction Participant List.
*
* @param interaction Interaction object.
* @return Castor Participant List.
*/
private InteractionElementType.ParticipantList getParticipantList(
org.cytoscape.coreplugin.psi_mi.model.Interaction interaction) {
InteractionElementType.ParticipantList participantList =
new InteractionElementType.ParticipantList();
List interactors = interaction.getInteractors();
for (int i = 0; i < interactors.size(); i++) {
Interactor interactor = (Interactor) interactors.get(i);
String name = interactor.getName();
ParticipantType participant1 = createParticipant(name);
participantList.getParticipant().add(participant1);
}
return participantList;
}
/**
* Gets a complete list of NonRedundant Proteins.
*
* @return HashMap of NonRedundant Proteins.
*/
private HashMap getNonRedundantInteractors() {
HashMap interactorMap = new HashMap();
for (int i = 0; i < interactions.size(); i++) {
org.cytoscape.coreplugin.psi_mi.model.Interaction interaction =
(org.cytoscape.coreplugin.psi_mi.model.Interaction) interactions.get(i);
List interactors = interaction.getInteractors();
for (int j = 0; j < interactors.size(); j++) {
Interactor interactor = (Interactor) interactors.get(j);
addToHashMap(interactor, interactorMap);
}
}
return interactorMap;
}
