Exemple #1
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 /**
  * is the read a SLX read?
  *
  * @param read the read to test
  * @return checks the read group tag PL for the default SLX tag
  */
 public static boolean isIlluminaRead(SAMRecord read) {
   return NGSPlatform.fromRead(read) == NGSPlatform.ILLUMINA;
 }
Exemple #2
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 /**
  * is the read an IonTorrent read?
  *
  * @param read the read to test
  * @return checks the read group tag PL for the default ion tag
  */
 public static boolean isIonRead(SAMRecord read) {
   return NGSPlatform.fromRead(read) == NGSPlatform.ION_TORRENT;
 }
Exemple #3
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 /**
  * is the read a SOLiD read?
  *
  * @param read the read to test
  * @return checks the read group tag PL for the default SOLiD tag
  */
 public static boolean isSOLiDRead(SAMRecord read) {
   return NGSPlatform.fromRead(read) == NGSPlatform.SOLID;
 }
Exemple #4
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 /**
  * is the read a 454 read?
  *
  * @param read the read to test
  * @return checks the read group tag PL for the default 454 tag
  */
 public static boolean is454Read(SAMRecord read) {
   return NGSPlatform.fromRead(read) == NGSPlatform.LS454;
 }