Exemple #1
0
  /**
   * Default constructor, called from {@link Open#open}.
   *
   * @param meta meta data
   * @throws IOException I/O Exception
   */
  public DiskData(final MetaData meta) throws IOException {
    super(meta);

    try (final DataInput in = new DataInput(meta.dbfile(DATAINF))) {
      meta.read(in);
      while (true) {
        final String k = string(in.readToken());
        if (k.isEmpty()) break;
        if (k.equals(DBTAGS)) elemNames = new Names(in, meta);
        else if (k.equals(DBATTS)) attrNames = new Names(in, meta);
        else if (k.equals(DBPATH)) paths = new PathSummary(this, in);
        else if (k.equals(DBNS)) nspaces = new Namespaces(in);
        else if (k.equals(DBDOCS)) resources.read(in);
      }
    }

    // open data and indexes
    init();
    if (meta.updindex) {
      idmap = new IdPreMap(meta.dbfile(DATAIDP));
      if (meta.textindex) textIndex = new UpdatableDiskValues(this, true);
      if (meta.attrindex) attrIndex = new UpdatableDiskValues(this, false);
    } else {
      if (meta.textindex) textIndex = new DiskValues(this, true);
      if (meta.attrindex) attrIndex = new DiskValues(this, false);
    }
    if (meta.ftxtindex) ftxtIndex = new FTIndex(this);
  }
Exemple #2
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  /**
   * Creates new node ids and recreates updatable index structures.
   *
   * @param data data
   * @throws IOException I/O Exception during index rebuild
   */
  public static void ids(final Data data) throws IOException {
    final MetaData md = data.meta;
    final int size = md.size;
    for (int pre = 0; pre < size; ++pre) data.id(pre, pre);
    md.lastid = size - 1;
    md.dirty = true;

    if (data.meta.updindex) {
      data.idmap = new IdPreMap(md.lastid);
      if (data.meta.textindex) optimize(IndexType.TEXT, data, true, true, true, null);
      if (data.meta.attrindex) optimize(IndexType.ATTRIBUTE, data, true, true, true, null);
    }
  }
Exemple #3
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  /**
   * Updates (renames) an element, attribute or pi name.
   *
   * @param pre pre value
   * @param kind node kind
   * @param name new tag, attribute or pi name
   * @param uri uri
   */
  public final void update(final int pre, final int kind, final byte[] name, final byte[] uri) {

    meta.update();

    if (kind == PI) {
      updateText(pre, trim(concat(name, SPACE, atom(pre))), kind);
    } else {
      // update/set namespace reference
      final int ouri = nspaces.uri(name, pre, this);
      final boolean ne = ouri == 0 && uri.length != 0;
      final int npre = kind == ATTR ? parent(pre, kind) : pre;
      final int nuri =
          ne
              ? nspaces.add(npre, npre, prefix(name), uri, this)
              : ouri != 0 && eq(nspaces.uri(ouri), uri) ? ouri : 0;

      // write namespace uri reference
      table.write1(pre, kind == ELEM ? 3 : 11, nuri);
      // write name reference
      table.write2(
          pre,
          1,
          (nsFlag(pre) ? 1 << 15 : 0)
              | (kind == ELEM ? tagindex : atnindex).index(name, null, false));
      // write namespace flag
      table.write2(npre, 1, (ne || nsFlag(npre) ? 1 << 15 : 0) | name(npre));
    }
  }
Exemple #4
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  /**
   * Updates (replaces) the value of a single document, text, comment, pi or attribute node.
   *
   * @param pre pre value to be replaced
   * @param kind node kind
   * @param value value to be updated (tag name, text, comment, pi)
   */
  public final void update(final int pre, final int kind, final byte[] value) {
    final byte[] v = kind == PI ? trim(concat(name(pre, kind), SPACE, value)) : value;
    if (eq(v, text(pre, kind != ATTR))) return;

    meta.update();
    updateText(pre, v, kind);
    if (kind == DOC) resources.rename(pre, value);
  }
Exemple #5
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  /**
   * Lists all databases.
   *
   * @return success flag
   * @throws IOException I/O exception
   */
  private boolean list() throws IOException {
    final Table table = new Table();
    table.description = DATABASES_X;

    final boolean create = context.user.has(Perm.CREATE);
    table.header.add(T_NAME);
    table.header.add(RESOURCES);
    table.header.add(SIZE);
    if (create) table.header.add(INPUT_PATH);

    for (final String name : context.databases.listDBs()) {
      String file = null;
      long size = 0;
      int docs = 0;
      final MetaData meta = new MetaData(name, context);
      try {
        meta.read();
        size = meta.dbsize();
        docs = meta.ndocs;
        if (context.perm(Perm.READ, meta)) file = meta.original;
      } catch (final IOException ex) {
        file = ERROR;
      }

      // count number of raw files
      final IOFile dir = new IOFile(mprop.dbpath(name), M_RAW);
      final int bin = dir.descendants().size();

      // create entry
      if (file != null) {
        final TokenList tl = new TokenList(4);
        tl.add(name);
        tl.add(docs + bin);
        tl.add(size);
        if (create) tl.add(file);
        table.contents.add(tl);
      }
    }
    out.println(table.sort().finish());
    return true;
  }
  /**
   * Checks if the table of the specified database is locked.
   *
   * @param db name of database
   * @param ctx database context
   * @return result of check
   */
  public static boolean locked(final String db, final Context ctx) {
    final IOFile table = MetaData.file(ctx.globalopts.dbpath(db), DATATBL);
    if (!table.exists()) return false;

    try (final RandomAccessFile file = new RandomAccessFile(table.file(), "rw")) {
      return file.getChannel().tryLock() == null;
    } catch (final ClosedChannelException ex) {
      return false;
    } catch (final OverlappingFileLockException | IOException ex) {
      return true;
    }
  }
Exemple #7
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  /**
   * Deletes a node and its descendants.
   *
   * @param pre pre value of the node to delete
   */
  public final void delete(final int pre) {
    meta.update();

    // size of the subtree to delete
    int k = kind(pre);
    final int s = size(pre, k);
    resources.delete(pre, s);

    if (meta.updindex) {
      // delete child records from indexes
      indexDelete(pre, s);
    }

    /// explicitly delete text or attribute value
    if (k != DOC && k != ELEM) delete(pre, k != ATTR);

    // reduce size of ancestors
    int par = pre;
    // check if we are an attribute (different size counters)
    if (k == ATTR) {
      par = parent(par, ATTR);
      attSize(par, ELEM, attSize(par, ELEM) - 1);
      size(par, ELEM, size(par, ELEM) - 1);
      k = kind(par);
    }

    // reduce size of ancestors
    while (par > 0 && k != DOC) {
      par = parent(par, k);
      k = kind(par);
      size(par, k, size(par, k) - s);
    }

    // preserve empty root node
    if (kind(pre) == DOC) --meta.ndocs;

    if (meta.updindex) {
      // delete node and descendants from ID -> PRE map:
      idmap.delete(pre, id(pre), -s);
    }

    // delete node from table structure and reduce document size
    table.delete(pre, s);

    if (!cache) updateDist(pre, -s);

    // propagate PRE value shifts to namespaces
    nspaces.delete(pre, s, this);
  }
Exemple #8
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  @Override
  protected boolean run() {
    final Data data = context.data();
    final MetaData meta = data.meta;
    size = meta.size;

    if (!startUpdate()) return false;
    boolean ok = true;
    try {
      // reassign autooptimize flag
      final boolean autoopt = options.get(MainOptions.AUTOOPTIMIZE);
      if (autoopt != data.meta.autoopt) {
        data.meta.autoopt = autoopt;
        data.meta.dirty = true;
      }
      optimize(data, this);
      ok = info(DB_OPTIMIZED_X, meta.name, perf);
    } catch (final IOException ex) {
      ok = error(Util.message(ex));
    } finally {
      ok &= finishUpdate();
    }
    return ok;
  }
Exemple #9
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  @Override
  protected boolean run() {
    final boolean create = context.user.has(Perm.CREATE);
    String path = MetaData.normPath(args[0]);
    if (path == null || path.endsWith(".")) return error(NAME_INVALID_X, args[0]);

    if (in == null) {
      final IO io = IO.get(args[1]);
      if (!io.exists() || io.isDir()) return error(RES_NOT_FOUND_X, create ? io : args[1]);
      in = io.inputSource();
      // set/add name of document
      if ((path.isEmpty() || path.endsWith("/")) && !(io instanceof IOContent)) path += io.name();
    }

    // ensure that the final name is not empty
    if (path.isEmpty()) return error(NAME_INVALID_X, path);

    // ensure that the name is not empty and contains no trailing dots
    final Data data = context.data();
    if (data.inMemory()) return error(NO_MAINMEM);

    final IOFile file = data.meta.binary(path);
    if (path.isEmpty() || path.endsWith(".") || file == null || file.isDir())
      return error(NAME_INVALID_X, create ? path : args[0]);

    // start update
    if (!data.startUpdate()) return error(DB_PINNED_X, data.meta.name);

    try {
      store(in, file);
      return info(QUERY_EXECUTED_X_X, "", perf);
    } catch (final IOException ex) {
      return error(FILE_NOT_STORED_X, Util.message(ex));
    } finally {
      data.finishUpdate();
    }
  }
Exemple #10
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  /**
   * Inserts a data instance at the specified pre value. Note that the specified data instance must
   * differ from this instance.
   *
   * @param ipre value at which to insert new data
   * @param ipar parent pre value of node
   * @param clip data clip
   */
  public final void insert(final int ipre, final int ipar, final DataClip clip) {
    meta.update();

    // update value and document indexes
    if (meta.updindex) indexBegin();
    resources.insert(ipre, clip);

    final int dsize = clip.size();
    final int buf = Math.min(dsize, IO.BLOCKSIZE >> IO.NODEPOWER);
    // resize buffer to cache more entries
    buffer(buf);

    // find all namespaces in scope to avoid duplicate declarations
    final TokenMap nsScope = nspaces.scope(ipar, this);

    // loop through all entries
    final IntList preStack = new IntList();
    final NSNode nsRoot = nspaces.current();
    final HashSet<NSNode> newNodes = new HashSet<NSNode>();
    final IntList flagPres = new IntList();

    // indicates if database only contains a dummy node
    final Data data = clip.data;
    int c = 0;
    for (int dpre = clip.start; dpre < clip.end; ++dpre, ++c) {
      if (c != 0 && c % buf == 0) insert(ipre + c - buf);

      final int pre = ipre + c;
      final int dkind = data.kind(dpre);
      final int dpar = data.parent(dpre, dkind);
      // ipar < 0 if document nodes on top level are added
      final int dis = dpar >= 0 ? dpre - dpar : ipar >= 0 ? pre - ipar : 0;
      final int par = dis == 0 ? -1 : pre - dis;

      if (c == 0) nspaces.root(par, this);

      while (!preStack.isEmpty() && preStack.peek() > par) nspaces.close(preStack.pop());

      switch (dkind) {
        case DOC:
          // add document
          nspaces.prepare();
          final int s = data.size(dpre, dkind);
          doc(pre, s, data.text(dpre, true));
          meta.ndocs++;
          preStack.push(pre);
          break;
        case ELEM:
          // add element
          nspaces.prepare();
          boolean ne = false;
          if (data.nsFlag(dpre)) {
            final Atts at = data.ns(dpre);
            for (int a = 0; a < at.size(); ++a) {
              // see if prefix has been declared/ is part of current ns scope
              final byte[] old = nsScope.get(at.name(a));
              if (old == null || !eq(old, at.value(a))) {
                // we have to keep track of all new NSNodes that are added
                // to the Namespace structure, as their pre values must not
                // be updated. I.e. if an NSNode N with pre value 3 existed
                // prior to inserting and two new nodes are inserted at
                // location pre == 3 we have to make sure N and only N gets
                // updated.
                newNodes.add(nspaces.add(at.name(a), at.value(a), pre));
                ne = true;
              }
            }
          }
          byte[] nm = data.name(dpre, dkind);
          elem(
              dis,
              tagindex.index(nm, null, false),
              data.attSize(dpre, dkind),
              data.size(dpre, dkind),
              nspaces.uri(nm, true),
              ne);
          preStack.push(pre);
          break;
        case TEXT:
        case COMM:
        case PI:
          // add text
          text(pre, dis, data.text(dpre, true), dkind);
          break;
        case ATTR:
          // add attribute
          nm = data.name(dpre, dkind);
          // check if prefix already in nsScope or not
          final byte[] attPref = prefix(nm);
          // check if prefix of attribute has already been declared, otherwise
          // add declaration to parent node
          if (data.nsFlag(dpre) && nsScope.get(attPref) == null) {
            nspaces.add(
                par,
                preStack.isEmpty() ? -1 : preStack.peek(),
                attPref,
                data.nspaces.uri(data.uri(dpre, dkind)),
                this);
            // save pre value to set ns flag later for this node. can't be done
            // here as direct table access would interfere with the buffer
            flagPres.add(par);
          }
          attr(
              pre,
              dis,
              atnindex.index(nm, null, false),
              data.text(dpre, false),
              nspaces.uri(nm, false),
              false);
          break;
      }
    }
    // finalize and update namespace structure
    while (!preStack.isEmpty()) nspaces.close(preStack.pop());
    nspaces.root(nsRoot);

    if (bp != 0) insert(ipre + c - 1 - (c - 1) % buf);
    // reset buffer to old size
    buffer(1);

    // set ns flags
    for (int f = 0; f < flagPres.size(); f++) {
      final int fl = flagPres.get(f);
      table.write2(fl, 1, name(fl) | 1 << 15);
    }

    // increase size of ancestors
    int p = ipar;
    while (p >= 0) {
      final int k = kind(p);
      size(p, k, size(p, k) + dsize);
      p = parent(p, k);
    }

    if (meta.updindex) {
      // add the entries to the ID -> PRE mapping:
      idmap.insert(ipre, id(ipre), dsize);
      indexEnd();
    }

    if (!cache) updateDist(ipre + dsize, dsize);

    // propagate PRE value shifts to namespaces
    if (ipar != -1) nspaces.insert(ipre, dsize, newNodes);
  }
Exemple #11
0
  /**
   * Replaces parts of the database with the specified data instance.
   *
   * @param rpre pre value to be replaced
   * @param clip data clip
   */
  public final void replace(final int rpre, final DataClip clip) {
    meta.update();

    final int dsize = clip.size();
    final Data data = clip.data;

    final int rkind = kind(rpre);
    final int rsize = size(rpre, rkind);
    final int rpar = parent(rpre, rkind);
    final int diff = dsize - rsize;
    buffer(dsize);
    resources.replace(rpre, rsize, clip);

    if (meta.updindex) {
      // update index
      indexDelete(rpre, rsize);
      indexBegin();
    }

    for (int dpre = clip.start; dpre < clip.end; ++dpre) {
      final int dkind = data.kind(dpre);
      final int dpar = data.parent(dpre, dkind);
      final int pre = rpre + dpre - clip.start;
      final int dis = dpar >= 0 ? dpre - dpar : pre - rpar;

      switch (dkind) {
        case DOC:
          // add document
          doc(pre, data.size(dpre, dkind), data.text(dpre, true));
          meta.ndocs++;
          break;
        case ELEM:
          // add element
          byte[] nm = data.name(dpre, dkind);
          elem(
              dis,
              tagindex.index(nm, null, false),
              data.attSize(dpre, dkind),
              data.size(dpre, dkind),
              nspaces.uri(nm, true),
              false);
          break;
        case TEXT:
        case COMM:
        case PI:
          // add text
          text(pre, dis, data.text(dpre, true), dkind);
          break;
        case ATTR:
          // add attribute
          nm = data.name(dpre, dkind);
          attr(
              pre,
              dis,
              atnindex.index(nm, null, false),
              data.text(dpre, false),
              nspaces.uri(nm, false),
              false);
          break;
      }
    }

    if (meta.updindex) {
      indexEnd();
      // update ID -> PRE map:
      idmap.delete(rpre, id(rpre), -rsize);
      idmap.insert(rpre, meta.lastid - dsize + 1, dsize);
    }

    // update table:
    table.replace(rpre, buffer(), rsize);
    buffer(1);

    // no distance/size update if the two subtrees are of equal size
    if (diff == 0) return;

    // increase/decrease size of ancestors, adjust distances of siblings
    int p = rpar;
    while (p >= 0) {
      final int k = kind(p);
      size(p, k, size(p, k) + diff);
      p = parent(p, k);
    }

    if (!cache) updateDist(rpre + dsize, diff);

    // adjust attribute size of parent if attributes inserted. attribute size
    // of parent cannot be reduced via a replace expression.
    int dpre = clip.start;
    if (data.kind(dpre) == ATTR) {
      int d = 0;
      while (dpre < clip.end && data.kind(dpre++) == ATTR) d++;
      if (d > 1) attSize(rpar, kind(rpar), d + 1);
    }
  }
Exemple #12
0
  /**
   * Optimizes the structures of a database.
   *
   * @param data data
   * @param enforceText enforce creation or deletion of text index
   * @param enforceAttr enforce creation or deletion of attribute index
   * @param enforceToken enforce creation or deletion of token index
   * @param enforceFt enforce creation or deletion of full-text index
   * @param cmd calling command instance (may be {@code null})
   * @throws IOException I/O Exception during index rebuild
   */
  public static void optimize(
      final Data data,
      final boolean enforceText,
      final boolean enforceAttr,
      final boolean enforceToken,
      final boolean enforceFt,
      final Optimize cmd)
      throws IOException {

    // initialize structural indexes
    final MetaData md = data.meta;
    if (!md.uptodate) {
      data.paths.init();
      data.elemNames.init();
      data.attrNames.init();
      md.dirty = true;

      final IntList pars = new IntList(), elms = new IntList();
      int n = 0;

      for (int pre = 0; pre < md.size; ++pre) {
        final byte kind = (byte) data.kind(pre);
        final int par = data.parent(pre, kind);
        while (!pars.isEmpty() && pars.peek() > par) {
          pars.pop();
          elms.pop();
        }

        final int level = pars.size();
        if (kind == Data.DOC) {
          data.paths.put(0, Data.DOC, level);
          pars.push(pre);
          elms.push(0);
          ++n;
        } else if (kind == Data.ELEM) {
          final int id = data.nameId(pre);
          data.elemNames.index(data.elemNames.key(id), null, true);
          data.paths.put(id, Data.ELEM, level);
          pars.push(pre);
          elms.push(id);
        } else if (kind == Data.ATTR) {
          final int id = data.nameId(pre);
          final byte[] val = data.text(pre, false);
          data.attrNames.index(data.attrNames.key(id), val, true);
          data.paths.put(id, Data.ATTR, level, val, md);
        } else {
          final byte[] val = data.text(pre, true);
          if (kind == Data.TEXT && level > 1) data.elemNames.index(elms.peek(), val);
          data.paths.put(0, kind, level, val, md);
        }
        if (cmd != null) cmd.pre = pre;
      }
      md.ndocs = n;
      md.uptodate = true;
    }

    // rebuild value indexes
    optimize(IndexType.TEXT, data, md.createtext, md.textindex, enforceText, cmd);
    optimize(IndexType.ATTRIBUTE, data, md.createattr, md.attrindex, enforceAttr, cmd);
    optimize(IndexType.TOKEN, data, md.createtoken, md.tokenindex, enforceToken, cmd);
    optimize(IndexType.FULLTEXT, data, md.createft, md.ftindex, enforceFt, cmd);
  }