private <T> void serializeDelegate(OutputStream out, Class<T> delegateClass) throws IOException {
// TODO: this should happen in context of the classloader and conf
SerializationFactory factory = new SerializationFactory(configuration);
Serializer<T> serializer = factory.getSerializer(delegateClass);
serializer.open(out);
serializer.serialize(delegateClass.cast(this.delegate));
}
@SuppressWarnings("unchecked")
public void readFields(DataInput is) throws IOException {
disableCounter = is.readBoolean();
isMultiInputs = is.readBoolean();
totalSplits = is.readInt();
splitIndex = is.readInt();
inputIndex = is.readInt();
targetOps = (ArrayList<OperatorKey>) readObject(is);
int splitLen = is.readInt();
String splitClassName = is.readUTF();
try {
Class splitClass = conf.getClassByName(splitClassName);
SerializationFactory sf = new SerializationFactory(conf);
// The correct call sequence for Deserializer is, we shall open, then deserialize, but we
// shall not close
Deserializer d = sf.getDeserializer(splitClass);
d.open((InputStream) is);
wrappedSplits = new InputSplit[splitLen];
for (int i = 0; i < splitLen; i++) {
wrappedSplits[i] = (InputSplit) ReflectionUtils.newInstance(splitClass, conf);
d.deserialize(wrappedSplits[i]);
}
} catch (ClassNotFoundException e) {
throw new IOException(e);
}
}
@SuppressWarnings("unchecked")
public void write(DataOutput os) throws IOException {
os.writeBoolean(disableCounter);
os.writeBoolean(isMultiInputs);
os.writeInt(totalSplits);
os.writeInt(splitIndex);
os.writeInt(inputIndex);
writeObject(targetOps, os);
os.writeInt(wrappedSplits.length);
os.writeUTF(wrappedSplits[0].getClass().getName());
SerializationFactory sf = new SerializationFactory(conf);
Serializer s = sf.getSerializer(wrappedSplits[0].getClass());
s.open((OutputStream) os);
for (int i = 0; i < wrappedSplits.length; i++) {
// The correct call sequence for Serializer is, we shall open, then serialize, but we shall
// not close
s.serialize(wrappedSplits[i]);
}
}
public void initialize(TezOutputContext outputContext, Configuration conf, int numOutputs)
throws IOException {
this.outputContext = outputContext;
this.conf = conf;
this.partitions = numOutputs;
rfs = ((LocalFileSystem) FileSystem.getLocal(this.conf)).getRaw();
// sorter
sorter =
ReflectionUtils.newInstance(
this.conf.getClass(
TezJobConfig.TEZ_RUNTIME_INTERNAL_SORTER_CLASS,
QuickSort.class,
IndexedSorter.class),
this.conf);
comparator = ConfigUtils.getIntermediateOutputKeyComparator(this.conf);
// k/v serialization
keyClass = ConfigUtils.getIntermediateOutputKeyClass(this.conf);
valClass = ConfigUtils.getIntermediateOutputValueClass(this.conf);
serializationFactory = new SerializationFactory(this.conf);
keySerializer = serializationFactory.getSerializer(keyClass);
valSerializer = serializationFactory.getSerializer(valClass);
// counters
mapOutputByteCounter = outputContext.getCounters().findCounter(TaskCounter.MAP_OUTPUT_BYTES);
mapOutputRecordCounter =
outputContext.getCounters().findCounter(TaskCounter.MAP_OUTPUT_RECORDS);
fileOutputByteCounter =
outputContext.getCounters().findCounter(TaskCounter.MAP_OUTPUT_MATERIALIZED_BYTES);
spilledRecordsCounter = outputContext.getCounters().findCounter(TaskCounter.SPILLED_RECORDS);
// compression
if (ConfigUtils.shouldCompressIntermediateOutput(this.conf)) {
Class<? extends CompressionCodec> codecClass =
ConfigUtils.getIntermediateOutputCompressorClass(this.conf, DefaultCodec.class);
codec = ReflectionUtils.newInstance(codecClass, this.conf);
} else {
codec = null;
}
// Task outputs
mapOutputFile = TezRuntimeUtils.instantiateTaskOutputManager(conf, outputContext);
LOG.info(
"Instantiating Partitioner: ["
+ conf.get(TezJobConfig.TEZ_RUNTIME_PARTITIONER_CLASS)
+ "]");
this.conf.setInt(TezJobConfig.TEZ_RUNTIME_NUM_EXPECTED_PARTITIONS, this.partitions);
this.partitioner = TezRuntimeUtils.instantiatePartitioner(this.conf);
this.combiner = TezRuntimeUtils.instantiateCombiner(this.conf, outputContext);
}
@SuppressWarnings("unchecked")
public MapOutputBuffer(TaskUmbilicalProtocol umbilical, JobConf job, Reporter reporter)
throws IOException {
this.job = job;
this.reporter = reporter;
localFs = FileSystem.getLocal(job);
partitions = job.getNumReduceTasks();
partitioner = (Partitioner) ReflectionUtils.newInstance(job.getPartitionerClass(), job);
// sanity checks
final float spillper = job.getFloat("io.sort.spill.percent", (float) 0.8);
final float recper = job.getFloat("io.sort.record.percent", (float) 0.05);
final int sortmb = job.getInt("io.sort.mb", 100);
if (spillper > (float) 1.0 || spillper < (float) 0.0) {
throw new IOException("Invalid \"io.sort.spill.percent\": " + spillper);
}
if (recper > (float) 1.0 || recper < (float) 0.01) {
throw new IOException("Invalid \"io.sort.record.percent\": " + recper);
}
if ((sortmb & 0x7FF) != sortmb) {
throw new IOException("Invalid \"io.sort.mb\": " + sortmb);
}
sorter =
(IndexedSorter)
ReflectionUtils.newInstance(job.getClass("map.sort.class", QuickSort.class), job);
LOG.info("io.sort.mb = " + sortmb);
// buffers and accounting
int maxMemUsage = sortmb << 20;
int recordCapacity = (int) (maxMemUsage * recper);
recordCapacity -= recordCapacity % RECSIZE;
kvbuffer = new byte[maxMemUsage - recordCapacity];
bufvoid = kvbuffer.length;
recordCapacity /= RECSIZE;
kvoffsets = new int[recordCapacity];
kvindices = new int[recordCapacity * ACCTSIZE];
softBufferLimit = (int) (kvbuffer.length * spillper);
softRecordLimit = (int) (kvoffsets.length * spillper);
LOG.info("data buffer = " + softBufferLimit + "/" + kvbuffer.length);
LOG.info("record buffer = " + softRecordLimit + "/" + kvoffsets.length);
// k/v serialization
comparator = job.getOutputKeyComparator();
keyClass = (Class<K>) job.getMapOutputKeyClass();
valClass = (Class<V>) job.getMapOutputValueClass();
serializationFactory = new SerializationFactory(job);
keySerializer = serializationFactory.getSerializer(keyClass);
keySerializer.open(bb);
valSerializer = serializationFactory.getSerializer(valClass);
valSerializer.open(bb);
// counters
Counters counters = getCounters();
mapOutputByteCounter = counters.findCounter(MAP_OUTPUT_BYTES);
mapOutputRecordCounter = counters.findCounter(MAP_OUTPUT_RECORDS);
combineInputCounter = counters.findCounter(COMBINE_INPUT_RECORDS);
combineOutputCounter = counters.findCounter(COMBINE_OUTPUT_RECORDS);
// compression
if (job.getCompressMapOutput()) {
Class<? extends CompressionCodec> codecClass =
job.getMapOutputCompressorClass(DefaultCodec.class);
codec = (CompressionCodec) ReflectionUtils.newInstance(codecClass, job);
}
// combiner
combinerClass = job.getCombinerClass();
combineCollector =
(null != combinerClass) ? new CombineOutputCollector(combineOutputCounter) : null;
minSpillsForCombine = job.getInt("min.num.spills.for.combine", 3);
}
/**
* create inmemory segments
*
* @return
* @throws IOException
*/
public List<TezMerger.Segment> createInMemStreams() throws IOException {
int numberOfStreams = Math.max(2, rnd.nextInt(10));
LOG.info("No of streams : " + numberOfStreams);
SerializationFactory serializationFactory = new SerializationFactory(conf);
Serializer keySerializer = serializationFactory.getSerializer(keyClass);
Serializer valueSerializer = serializationFactory.getSerializer(valClass);
LocalDirAllocator localDirAllocator =
new LocalDirAllocator(TezRuntimeFrameworkConfigs.LOCAL_DIRS);
InputContext context = createTezInputContext();
MergeManager mergeManager =
new MergeManager(
conf,
fs,
localDirAllocator,
context,
null,
null,
null,
null,
null,
1024 * 1024 * 10,
null,
false,
-1);
DataOutputBuffer keyBuf = new DataOutputBuffer();
DataOutputBuffer valBuf = new DataOutputBuffer();
DataInputBuffer keyIn = new DataInputBuffer();
DataInputBuffer valIn = new DataInputBuffer();
keySerializer.open(keyBuf);
valueSerializer.open(valBuf);
List<TezMerger.Segment> segments = new LinkedList<TezMerger.Segment>();
for (int i = 0; i < numberOfStreams; i++) {
BoundedByteArrayOutputStream bout = new BoundedByteArrayOutputStream(1024 * 1024);
InMemoryWriter writer = new InMemoryWriter(bout);
Map<Writable, Writable> data = createData();
// write data
for (Map.Entry<Writable, Writable> entry : data.entrySet()) {
keySerializer.serialize(entry.getKey());
valueSerializer.serialize(entry.getValue());
keyIn.reset(keyBuf.getData(), 0, keyBuf.getLength());
valIn.reset(valBuf.getData(), 0, valBuf.getLength());
writer.append(keyIn, valIn);
originalData.put(entry.getKey(), entry.getValue());
keyBuf.reset();
valBuf.reset();
keyIn.reset();
valIn.reset();
}
IFile.Reader reader =
new InMemoryReader(mergeManager, null, bout.getBuffer(), 0, bout.getBuffer().length);
segments.add(new TezMerger.Segment(reader, true));
data.clear();
writer.close();
}
return segments;
}
private static void extract(
List<RubixFile<Tuple, Object>> rfiles, long blockId, int numBlocks, String output)
throws IOException, ClassNotFoundException, InstantiationException, IllegalAccessException {
Configuration conf = new JobConf();
File outFile = new File(output);
if (outFile.exists()) {
outFile.delete();
}
outFile.createNewFile();
BufferedOutputStream bos = new BufferedOutputStream(new FileOutputStream(outFile));
ByteArrayOutputStream keySectionStream = new ByteArrayOutputStream();
DataOutput keySectionOut = new DataOutputStream(keySectionStream);
SerializationFactory serializationFactory = new SerializationFactory(conf);
RubixFile<Tuple, Object> lastrFile = null;
JsonNode json;
long totalLength = 0;
final int BUF_SIZE = 32 * 1024;
long blockIds[] = new long[numBlocks];
int foundBlocks = 0;
for (int i = 0; i < numBlocks; i++) blockIds[i] = blockId + i;
for (int i = 0; i < numBlocks; i++) {
boolean found = false;
for (RubixFile<Tuple, Object> rfile : rfiles) {
print.f("Checking %s", rfile.path.toString());
List<KeyData<Tuple>> keyDataList = rfile.getKeyData();
for (KeyData<Tuple> keyData : keyDataList) {
if (keyData.getBlockId() == blockIds[i]) {
long offset = keyData.getOffset();
long length = keyData.getLength();
Tuple key = keyData.getKey();
print.f(
"Extracting block %d (off=%d len=%d) from %s",
keyData.getBlockId(), offset, length, rfile.path.toString());
// copy the data
if (length > 0) {
FileSystem fs = FileSystem.get(conf);
FSDataInputStream in = fs.open(rfile.path);
in.seek(offset);
byte[] data = new byte[BUF_SIZE];
long toRead = length;
while (toRead > 0) {
int thisRead = toRead > BUF_SIZE ? BUF_SIZE : (int) toRead;
in.readFully(data, 0, thisRead);
bos.write(data, 0, thisRead);
toRead -= thisRead;
System.out.print(".");
}
System.out.println();
}
// copy the key section
Serializer<Tuple> keySerializer =
serializationFactory.getSerializer(rfile.getKeyClass());
keySerializer.open(keySectionStream);
keySerializer.serialize(key);
keySectionOut.writeLong(totalLength); // position
keySectionOut.writeLong(keyData.getBlockId());
keySectionOut.writeLong(keyData.getNumRecords());
foundBlocks++;
totalLength += length;
lastrFile = rfile;
found = true;
break;
}
}
if (found) {
break;
}
}
if (!found) System.err.println("Cannot locate block with id " + blockIds[i]);
}
byte[] trailerBytes = keySectionStream.toByteArray();
json = JsonUtils.cloneNode(lastrFile.metadataJson);
((ObjectNode) json).put("numberOfBlocks", foundBlocks);
DataOutput out = new DataOutputStream(bos);
out.writeUTF(json.toString());
out.writeInt(trailerBytes.length);
out.write(trailerBytes);
out.writeLong(totalLength); // trailer start offset
bos.close();
}
@SuppressWarnings("unchecked")
public List<KeyData<K>> getKeyData() throws IOException, ClassNotFoundException {
if (keyData != null) return keyData;
final FileSystem fs = FileSystem.get(conf);
keyData = new ArrayList<KeyData<K>>();
final long filesize = fs.getFileStatus(path).getLen();
FSDataInputStream in = fs.open(path);
/* The last long in the file is the start position of the trailer section */
in.seek(filesize - 8);
long metaDataStartPos = in.readLong();
in.seek(metaDataStartPos);
ObjectMapper mapper = new ObjectMapper();
metadataJson = mapper.readValue(in.readUTF(), JsonNode.class);
int keySectionSize = in.readInt();
// load the key section
byte[] keySection = new byte[keySectionSize];
in.seek(filesize - keySectionSize - 8);
in.read(keySection, 0, keySectionSize);
in.close();
ByteArrayInputStream bis = new ByteArrayInputStream(keySection);
DataInput dataInput = new DataInputStream(bis);
int numberOfBlocks = metadataJson.get("numberOfBlocks").getIntValue();
// load the key section
keyClass = (Class<K>) ClassCache.forName(JsonUtils.getText(metadataJson, "keyClass"));
valueClass = (Class<V>) ClassCache.forName(JsonUtils.getText(metadataJson, "valueClass"));
SerializationFactory serializationFactory = new SerializationFactory(conf);
Deserializer<K> deserializer = serializationFactory.getDeserializer(keyClass);
deserializer.open(bis);
while (bis.available() > 0 && numberOfBlocks > 0) {
K key = deserializer.deserialize(null);
long offset = dataInput.readLong();
long blockId = dataInput.readLong();
long numRecords = dataInput.readLong();
keyData.add(new KeyData<K>(key, offset, 0, numRecords, blockId));
numberOfBlocks--;
}
// Assign length to each keydata entry
int numEntries = keyData.size();
for (int i = 1; i < numEntries; i++) {
KeyData<K> prev = keyData.get(i - 1);
KeyData<K> current = keyData.get(i);
prev.setLength(current.getOffset() - prev.getOffset());
}
if (numEntries > 0) {
KeyData<K> last = keyData.get(numEntries - 1);
last.setLength(metaDataStartPos - last.offset);
}
return keyData;
}
