public ColumnFamilyStore testSingleSSTableCompaction(String strategyClassName) throws Exception {
Keyspace keyspace = Keyspace.open(KEYSPACE1);
ColumnFamilyStore store = keyspace.getColumnFamilyStore(CF_STANDARD1);
store.clearUnsafe();
store.metadata.gcGraceSeconds(1);
store.setCompactionStrategyClass(strategyClassName);
// disable compaction while flushing
store.disableAutoCompaction();
long timestamp = populate(KEYSPACE1, CF_STANDARD1, 0, 9, 3); // ttl=3s
store.forceBlockingFlush();
assertEquals(1, store.getSSTables().size());
long originalSize = store.getSSTables().iterator().next().uncompressedLength();
// wait enough to force single compaction
TimeUnit.SECONDS.sleep(5);
// enable compaction, submit background and wait for it to complete
store.enableAutoCompaction();
FBUtilities.waitOnFutures(CompactionManager.instance.submitBackground(store));
while (CompactionManager.instance.getPendingTasks() > 0
|| CompactionManager.instance.getActiveCompactions() > 0) TimeUnit.SECONDS.sleep(1);
// and sstable with ttl should be compacted
assertEquals(1, store.getSSTables().size());
long size = store.getSSTables().iterator().next().uncompressedLength();
assertTrue("should be less than " + originalSize + ", but was " + size, size < originalSize);
// make sure max timestamp of compacted sstables is recorded properly after compaction.
assertMaxTimestamp(store, timestamp);
return store;
}
public int blockForWrites() throws IOException {
for (Map.Entry<Integer, AtomicInteger> entry : invalidMutations.entrySet())
logger.info(
String.format(
"Skipped %d mutations from unknown (probably removed) CF with id %s",
entry.getValue().intValue(), entry.getKey()));
// wait for all the writes to finish on the mutation stage
FBUtilities.waitOnFutures(futures);
logger.debug("Finished waiting on mutations from recovery");
// flush replayed tables
futures.clear();
for (Table table : tablesRecovered) futures.addAll(table.flush());
FBUtilities.waitOnFutures(futures);
return replayedCount.get();
}
public ColumnFamilyStore testSingleSSTableCompaction(String strategyClassName) throws Exception {
Keyspace keyspace = Keyspace.open(KEYSPACE1);
ColumnFamilyStore store = keyspace.getColumnFamilyStore("Standard1");
store.clearUnsafe();
store.metadata.gcGraceSeconds(1);
store.setCompactionStrategyClass(strategyClassName);
// disable compaction while flushing
store.disableAutoCompaction();
long timestamp = System.currentTimeMillis();
for (int i = 0; i < 10; i++) {
DecoratedKey key = Util.dk(Integer.toString(i));
RowMutation rm = new RowMutation(KEYSPACE1, key.key);
for (int j = 0; j < 10; j++)
rm.add(
"Standard1",
ByteBufferUtil.bytes(Integer.toString(j)),
ByteBufferUtil.EMPTY_BYTE_BUFFER,
timestamp,
j > 0
? 3
: 0); // let first column never expire, since deleting all columns does not produce
// sstable
rm.apply();
}
store.forceBlockingFlush();
assertEquals(1, store.getSSTables().size());
long originalSize = store.getSSTables().iterator().next().uncompressedLength();
// wait enough to force single compaction
TimeUnit.SECONDS.sleep(5);
// enable compaction, submit background and wait for it to complete
store.enableAutoCompaction();
FBUtilities.waitOnFutures(CompactionManager.instance.submitBackground(store));
while (CompactionManager.instance.getPendingTasks() > 0
|| CompactionManager.instance.getActiveCompactions() > 0) TimeUnit.SECONDS.sleep(1);
// and sstable with ttl should be compacted
assertEquals(1, store.getSSTables().size());
long size = store.getSSTables().iterator().next().uncompressedLength();
assertTrue("should be less than " + originalSize + ", but was " + size, size < originalSize);
// make sure max timestamp of compacted sstables is recorded properly after compaction.
assertMaxTimestamp(store, timestamp);
return store;
}
public static void recover(File[] clogs) throws IOException {
Set<Table> tablesRecovered = new HashSet<Table>();
List<Future<?>> futures = new ArrayList<Future<?>>();
byte[] bytes = new byte[4096];
Map<Integer, AtomicInteger> invalidMutations = new HashMap<Integer, AtomicInteger>();
for (File file : clogs) {
int bufferSize = (int) Math.min(file.length(), 32 * 1024 * 1024);
BufferedRandomAccessFile reader =
new BufferedRandomAccessFile(file.getAbsolutePath(), "r", bufferSize);
try {
CommitLogHeader clHeader = null;
int replayPosition = 0;
String headerPath = CommitLogHeader.getHeaderPathFromSegmentPath(file.getAbsolutePath());
try {
clHeader = CommitLogHeader.readCommitLogHeader(headerPath);
replayPosition = clHeader.getReplayPosition();
} catch (IOException ioe) {
logger.info(
headerPath
+ " incomplete, missing or corrupt. Everything is ok, don't panic. CommitLog will be replayed from the beginning");
logger.debug("exception was", ioe);
}
if (replayPosition < 0) {
logger.debug("skipping replay of fully-flushed {}", file);
continue;
}
reader.seek(replayPosition);
if (logger.isDebugEnabled())
logger.debug("Replaying " + file + " starting at " + reader.getFilePointer());
/* read the logs populate RowMutation and apply */
while (!reader.isEOF()) {
if (logger.isDebugEnabled())
logger.debug("Reading mutation at " + reader.getFilePointer());
long claimedCRC32;
Checksum checksum = new CRC32();
int serializedSize;
try {
// any of the reads may hit EOF
serializedSize = reader.readInt();
long claimedSizeChecksum = reader.readLong();
checksum.update(serializedSize);
if (checksum.getValue() != claimedSizeChecksum || serializedSize <= 0)
break; // entry wasn't synced correctly/fully. that's ok.
if (serializedSize > bytes.length) bytes = new byte[(int) (1.2 * serializedSize)];
reader.readFully(bytes, 0, serializedSize);
claimedCRC32 = reader.readLong();
} catch (EOFException eof) {
break; // last CL entry didn't get completely written. that's ok.
}
checksum.update(bytes, 0, serializedSize);
if (claimedCRC32 != checksum.getValue()) {
// this entry must not have been fsynced. probably the rest is bad too,
// but just in case there is no harm in trying them (since we still read on an entry
// boundary)
continue;
}
/* deserialize the commit log entry */
ByteArrayInputStream bufIn = new ByteArrayInputStream(bytes, 0, serializedSize);
RowMutation rm = null;
try {
rm = RowMutation.serializer().deserialize(new DataInputStream(bufIn));
} catch (UnserializableColumnFamilyException ex) {
AtomicInteger i = invalidMutations.get(ex.cfId);
if (i == null) {
i = new AtomicInteger(1);
invalidMutations.put(ex.cfId, i);
} else i.incrementAndGet();
continue;
}
if (logger.isDebugEnabled())
logger.debug(
String.format(
"replaying mutation for %s.%s: %s",
rm.getTable(),
rm.key(),
"{" + StringUtils.join(rm.getColumnFamilies(), ", ") + "}"));
final Table table = Table.open(rm.getTable());
tablesRecovered.add(table);
final Collection<ColumnFamily> columnFamilies =
new ArrayList<ColumnFamily>(rm.getColumnFamilies());
final long entryLocation = reader.getFilePointer();
final CommitLogHeader finalHeader = clHeader;
final RowMutation frm = rm;
Runnable runnable =
new WrappedRunnable() {
public void runMayThrow() throws IOException {
RowMutation newRm = new RowMutation(frm.getTable(), frm.key());
// Rebuild the row mutation, omitting column families that a) have already been
// flushed,
// b) are part of a cf that was dropped. Keep in mind that the cf.name() is
// suspect. do every
// thing based on the cfid instead.
for (ColumnFamily columnFamily : columnFamilies) {
if (CFMetaData.getCF(columnFamily.id()) == null)
// null means the cf has been dropped
continue;
if (finalHeader == null
|| (finalHeader.isDirty(columnFamily.id())
&& entryLocation >= finalHeader.getPosition(columnFamily.id())))
newRm.add(columnFamily);
}
if (!newRm.isEmpty()) {
Table.open(newRm.getTable()).apply(newRm, null, false);
}
}
};
futures.add(StageManager.getStage(Stage.MUTATION).submit(runnable));
if (futures.size() > MAX_OUTSTANDING_REPLAY_COUNT) {
FBUtilities.waitOnFutures(futures);
futures.clear();
}
}
} finally {
reader.close();
logger.info("Finished reading " + file);
}
}
for (Map.Entry<Integer, AtomicInteger> entry : invalidMutations.entrySet())
logger.info(
String.format(
"Skipped %d mutations from unknown (probably removed) CF with id %d",
entry.getValue().intValue(), entry.getKey()));
// wait for all the writes to finish on the mutation stage
FBUtilities.waitOnFutures(futures);
logger.debug("Finished waiting on mutations from recovery");
// flush replayed tables
futures.clear();
for (Table table : tablesRecovered) futures.addAll(table.flush());
FBUtilities.waitOnFutures(futures);
logger.info("Recovery complete");
}
public void recover(File file) throws IOException {
logger.info("Replaying " + file.getPath());
final long segment = CommitLogSegment.idFromFilename(file.getName());
RandomAccessReader reader = RandomAccessReader.open(new File(file.getAbsolutePath()), true);
try {
assert reader.length() <= Integer.MAX_VALUE;
int replayPosition;
if (globalPosition.segment < segment) replayPosition = 0;
else if (globalPosition.segment == segment) replayPosition = globalPosition.position;
else replayPosition = (int) reader.length();
if (replayPosition < 0 || replayPosition >= reader.length()) {
// replayPosition > reader.length() can happen if some data gets flushed before it is
// written to the commitlog
// (see https://issues.apache.org/jira/browse/CASSANDRA-2285)
logger.debug("skipping replay of fully-flushed {}", file);
return;
}
reader.seek(replayPosition);
if (logger.isDebugEnabled())
logger.debug("Replaying " + file + " starting at " + reader.getFilePointer());
/* read the logs populate RowMutation and apply */
while (!reader.isEOF()) {
if (logger.isDebugEnabled()) logger.debug("Reading mutation at " + reader.getFilePointer());
long claimedCRC32;
int serializedSize;
try {
// any of the reads may hit EOF
serializedSize = reader.readInt();
if (serializedSize == CommitLog.END_OF_SEGMENT_MARKER) {
logger.debug("Encountered end of segment marker at " + reader.getFilePointer());
break;
}
// RowMutation must be at LEAST 10 bytes:
// 3 each for a non-empty Table and Key (including the
// 2-byte length from writeUTF/writeWithShortLength) and 4 bytes for column count.
// This prevents CRC by being fooled by special-case garbage in the file; see
// CASSANDRA-2128
if (serializedSize < 10) break;
long claimedSizeChecksum = reader.readLong();
checksum.reset();
checksum.update(serializedSize);
if (checksum.getValue() != claimedSizeChecksum)
break; // entry wasn't synced correctly/fully. that's
// ok.
if (serializedSize > buffer.length) buffer = new byte[(int) (1.2 * serializedSize)];
reader.readFully(buffer, 0, serializedSize);
claimedCRC32 = reader.readLong();
} catch (EOFException eof) {
break; // last CL entry didn't get completely written. that's ok.
}
checksum.update(buffer, 0, serializedSize);
if (claimedCRC32 != checksum.getValue()) {
// this entry must not have been fsynced. probably the rest is bad too,
// but just in case there is no harm in trying them (since we still read on an entry
// boundary)
continue;
}
/* deserialize the commit log entry */
FastByteArrayInputStream bufIn = new FastByteArrayInputStream(buffer, 0, serializedSize);
RowMutation rm;
try {
// assuming version here. We've gone to lengths to make sure what gets written to the CL
// is in
// the current version. so do make sure the CL is drained prior to upgrading a node.
rm =
RowMutation.serializer()
.deserialize(
new DataInputStream(bufIn),
MessagingService.version_,
IColumnSerializer.Flag.LOCAL);
} catch (UnknownColumnFamilyException ex) {
AtomicInteger i = invalidMutations.get(ex.cfId);
if (i == null) {
i = new AtomicInteger(1);
invalidMutations.put(ex.cfId, i);
} else i.incrementAndGet();
continue;
}
if (logger.isDebugEnabled())
logger.debug(
String.format(
"replaying mutation for %s.%s: %s",
rm.getTable(),
ByteBufferUtil.bytesToHex(rm.key()),
"{" + StringUtils.join(rm.getColumnFamilies().iterator(), ", ") + "}"));
final long entryLocation = reader.getFilePointer();
final RowMutation frm = rm;
Runnable runnable =
new WrappedRunnable() {
public void runMayThrow() throws IOException {
if (Schema.instance.getKSMetaData(frm.getTable()) == null) return;
if (pointInTimeExceeded(frm)) return;
final Table table = Table.open(frm.getTable());
RowMutation newRm = new RowMutation(frm.getTable(), frm.key());
// Rebuild the row mutation, omitting column families that
// a) have already been flushed,
// b) are part of a cf that was dropped. Keep in mind that the cf.name() is suspect.
// do every thing based on the cfid instead.
for (ColumnFamily columnFamily : frm.getColumnFamilies()) {
if (Schema.instance.getCF(columnFamily.id()) == null)
// null means the cf has been dropped
continue;
ReplayPosition rp = cfPositions.get(columnFamily.id());
// replay if current segment is newer than last flushed one or,
// if it is the last known segment, if we are after the replay position
if (segment > rp.segment
|| (segment == rp.segment && entryLocation > rp.position)) {
newRm.add(columnFamily);
replayedCount.incrementAndGet();
}
}
if (!newRm.isEmpty()) {
Table.open(newRm.getTable()).apply(newRm, false);
tablesRecovered.add(table);
}
}
};
futures.add(StageManager.getStage(Stage.MUTATION).submit(runnable));
if (futures.size() > MAX_OUTSTANDING_REPLAY_COUNT) {
FBUtilities.waitOnFutures(futures);
futures.clear();
}
}
} finally {
FileUtils.closeQuietly(reader);
logger.info("Finished reading " + file);
}
}
@Test
public void testUncheckedTombstoneSizeTieredCompaction() throws Exception {
Keyspace keyspace = Keyspace.open(KEYSPACE1);
ColumnFamilyStore store = keyspace.getColumnFamilyStore(CF_STANDARD1);
store.clearUnsafe();
store.metadata.gcGraceSeconds(1);
store.metadata.compactionStrategyOptions.put("tombstone_compaction_interval", "1");
store.metadata.compactionStrategyOptions.put("unchecked_tombstone_compaction", "false");
store.reload();
store.setCompactionStrategyClass(SizeTieredCompactionStrategy.class.getName());
// disable compaction while flushing
store.disableAutoCompaction();
// Populate sstable1 with with keys [0..9]
populate(KEYSPACE1, CF_STANDARD1, 0, 9, 3); // ttl=3s
store.forceBlockingFlush();
// Populate sstable2 with with keys [10..19] (keys do not overlap with SSTable1)
long timestamp2 = populate(KEYSPACE1, CF_STANDARD1, 10, 19, 3); // ttl=3s
store.forceBlockingFlush();
assertEquals(2, store.getSSTables().size());
Iterator<SSTableReader> it = store.getSSTables().iterator();
long originalSize1 = it.next().uncompressedLength();
long originalSize2 = it.next().uncompressedLength();
// wait enough to force single compaction
TimeUnit.SECONDS.sleep(5);
// enable compaction, submit background and wait for it to complete
store.enableAutoCompaction();
FBUtilities.waitOnFutures(CompactionManager.instance.submitBackground(store));
while (CompactionManager.instance.getPendingTasks() > 0
|| CompactionManager.instance.getActiveCompactions() > 0) TimeUnit.SECONDS.sleep(1);
// even though both sstables were candidate for tombstone compaction
// it was not executed because they have an overlapping token range
assertEquals(2, store.getSSTables().size());
it = store.getSSTables().iterator();
long newSize1 = it.next().uncompressedLength();
long newSize2 = it.next().uncompressedLength();
assertEquals(
"candidate sstable should not be tombstone-compacted because its key range overlap with other sstable",
originalSize1,
newSize1);
assertEquals(
"candidate sstable should not be tombstone-compacted because its key range overlap with other sstable",
originalSize2,
newSize2);
// now let's enable the magic property
store.metadata.compactionStrategyOptions.put("unchecked_tombstone_compaction", "true");
store.reload();
// submit background task again and wait for it to complete
FBUtilities.waitOnFutures(CompactionManager.instance.submitBackground(store));
while (CompactionManager.instance.getPendingTasks() > 0
|| CompactionManager.instance.getActiveCompactions() > 0) TimeUnit.SECONDS.sleep(1);
// we still have 2 sstables, since they were not compacted against each other
assertEquals(2, store.getSSTables().size());
it = store.getSSTables().iterator();
newSize1 = it.next().uncompressedLength();
newSize2 = it.next().uncompressedLength();
assertTrue(
"should be less than " + originalSize1 + ", but was " + newSize1, newSize1 < originalSize1);
assertTrue(
"should be less than " + originalSize2 + ", but was " + newSize2, newSize2 < originalSize2);
// make sure max timestamp of compacted sstables is recorded properly after compaction.
assertMaxTimestamp(store, timestamp2);
}
@Test
public void testParallelLeveledCompaction() throws Exception {
String ksname = "Keyspace1";
String cfname = "StandardLeveled";
Keyspace keyspace = Keyspace.open(ksname);
ColumnFamilyStore store = keyspace.getColumnFamilyStore(cfname);
store.disableAutoCompaction();
LeveledCompactionStrategy lcs = (LeveledCompactionStrategy) store.getCompactionStrategy();
ByteBuffer value =
ByteBuffer.wrap(new byte[100 * 1024]); // 100 KB value, make it easy to have multiple files
// Enough data to have a level 1 and 2
int rows = 128;
int columns = 10;
// Adds enough data to trigger multiple sstable per level
for (int r = 0; r < rows; r++) {
DecoratedKey key = Util.dk(String.valueOf(r));
RowMutation rm = new RowMutation(ksname, key.key);
for (int c = 0; c < columns; c++) {
rm.add(cfname, ByteBufferUtil.bytes("column" + c), value, 0);
}
rm.apply();
store.forceBlockingFlush();
}
// Execute LCS in parallel
ExecutorService executor =
new ThreadPoolExecutor(
4, 4, Long.MAX_VALUE, TimeUnit.SECONDS, new LinkedBlockingDeque<Runnable>());
List<Runnable> tasks = new ArrayList<Runnable>();
while (true) {
while (true) {
final AbstractCompactionTask t = lcs.getMaximalTask(Integer.MIN_VALUE);
if (t == null) break;
tasks.add(
new Runnable() {
public void run() {
t.execute(null);
}
});
}
if (tasks.isEmpty()) break;
List<Future<?>> futures = new ArrayList<Future<?>>(tasks.size());
for (Runnable r : tasks) futures.add(executor.submit(r));
FBUtilities.waitOnFutures(futures);
tasks.clear();
}
// Assert all SSTables are lined up correctly.
LeveledManifest manifest = lcs.manifest;
int levels = manifest.getLevelCount();
for (int level = 0; level < levels; level++) {
List<SSTableReader> sstables = manifest.getLevel(level);
// score check
assert (double) SSTable.getTotalBytes(sstables) / manifest.maxBytesForLevel(level) < 1.00;
// overlap check for levels greater than 0
if (level > 0) {
for (SSTableReader sstable : sstables) {
Set<SSTableReader> overlaps = LeveledManifest.overlapping(sstable, sstables);
assert overlaps.size() == 1 && overlaps.contains(sstable);
}
}
}
for (SSTableReader sstable : store.getSSTables()) {
assert sstable.getSSTableLevel() == sstable.getSSTableLevel();
}
}
