/**
* Updates the study bean with inputs from second section
*
* @param request
* @return true if study type is Interventional, otherwise false
*/
private boolean updateStudy2() {
FormProcessor fp = new FormProcessor(request);
StudyBean newStudy = (StudyBean) session.getAttribute("newStudy");
// this is not fully supported yet, because the system will not handle
// studies which are pending
// or private...
newStudy.setStatus(Status.get(fp.getInt("statusId")));
newStudy.setProtocolDateVerification(fp.getDate(INPUT_VER_DATE));
newStudy.setDatePlannedStart(fp.getDate(INPUT_START_DATE));
if (StringUtil.isBlank(fp.getString(INPUT_END_DATE))) {
newStudy.setDatePlannedEnd(null);
} else {
newStudy.setDatePlannedEnd(fp.getDate(INPUT_END_DATE));
}
newStudy.setPhase(fp.getString("phase"));
if (fp.getInt("genetic") == 1) {
newStudy.setGenetic(true);
} else {
newStudy.setGenetic(false);
}
session.setAttribute("newStudy", newStudy);
String interventional = resadmin.getString("interventional");
return interventional.equalsIgnoreCase(newStudy.getProtocolType());
}
public SimpleTrigger generateImportTrigger(
FormProcessor fp,
UserAccountBean userAccount,
StudyBean study,
Date startDateTime,
String locale) {
String jobName = fp.getString(JOB_NAME);
String email = fp.getString(EMAIL);
String jobDesc = fp.getString(JOB_DESC);
String directory = fp.getString(DIRECTORY);
// what kinds of periods do we have? hourly, daily, weekly?
long interval = 0;
int hours = fp.getInt("hours");
int minutes = fp.getInt("minutes");
if (hours > 0) {
long hoursInt = hours * 3600000;
interval = interval + hoursInt;
}
if (minutes > 0) {
long minutesInt = minutes * 60000;
interval = interval + minutesInt;
}
SimpleTrigger trigger = new SimpleTrigger(jobName, IMPORT_TRIGGER, 64000, interval);
trigger.setDescription(jobDesc);
// set just the start date
trigger.setStartTime(startDateTime);
trigger.setName(jobName); // + datasetId);
trigger.setGroup(IMPORT_TRIGGER); // + datasetId);
trigger.setMisfireInstruction(
SimpleTrigger.MISFIRE_INSTRUCTION_RESCHEDULE_NEXT_WITH_EXISTING_COUNT);
// set job data map
JobDataMap jobDataMap = new JobDataMap();
jobDataMap.put(EMAIL, email);
jobDataMap.put(USER_ID, userAccount.getId());
jobDataMap.put(STUDY_NAME, study.getName());
jobDataMap.put(STUDY_OID, study.getOid());
jobDataMap.put(DIRECTORY, directory);
jobDataMap.put(ExampleSpringJob.LOCALE, locale);
jobDataMap.put("hours", hours);
jobDataMap.put("minutes", minutes);
trigger.setJobDataMap(jobDataMap);
trigger.setVolatility(false);
return trigger;
}
@Override
protected void processRequest() throws Exception {
FormProcessor fp = new FormProcessor(request);
TriggerService triggerService = new TriggerService();
String action = fp.getString("action");
String triggerName = fp.getString("tname");
scheduler = getScheduler();
System.out.println("found trigger name " + triggerName);
Trigger trigger = scheduler.getTrigger(triggerName.trim(), TRIGGER_IMPORT_GROUP);
System.out.println("found trigger from the other side " + trigger.getFullName());
if (StringUtil.isBlank(action)) {
setUpServlet(trigger);
forwardPage(Page.UPDATE_JOB_IMPORT);
} else if ("confirmall".equalsIgnoreCase(action)) {
HashMap errors =
triggerService.validateImportJobForm(
fp, request, scheduler.getTriggerNames("DEFAULT"), trigger.getName());
if (!errors.isEmpty()) {
// send back
addPageMessage(
"Your modifications caused an error, please see the messages for more information.");
setUpServlet(trigger);
forwardPage(Page.UPDATE_JOB_IMPORT);
} else {
StudyDAO studyDAO = new StudyDAO(sm.getDataSource());
int studyId = fp.getInt(CreateJobImportServlet.STUDY_ID);
StudyBean study = (StudyBean) studyDAO.findByPK(studyId);
// in the place of a users' current study, tbh
Date startDate = trigger.getStartTime();
trigger =
triggerService.generateImportTrigger(
fp, sm.getUserBean(), study, startDate, request.getLocale().getLanguage());
// scheduler = getScheduler();
JobDetailBean jobDetailBean = new JobDetailBean();
jobDetailBean.setGroup(TRIGGER_IMPORT_GROUP);
jobDetailBean.setName(trigger.getName());
jobDetailBean.setJobClass(org.akaza.openclinica.web.job.ImportStatefulJob.class);
jobDetailBean.setJobDataMap(trigger.getJobDataMap());
jobDetailBean.setDurability(true); // need durability?
jobDetailBean.setVolatility(false);
try {
scheduler.deleteJob(triggerName, TRIGGER_IMPORT_GROUP);
Date dateStart = scheduler.scheduleJob(jobDetailBean, trigger);
addPageMessage("Your job has been successfully modified.");
forwardPage(Page.VIEW_IMPORT_JOB_SERVLET);
} catch (SchedulerException se) {
se.printStackTrace();
// set a message here with the exception message
setUpServlet(trigger);
addPageMessage(
"There was an unspecified error with your creation, please contact an administrator.");
forwardPage(Page.UPDATE_JOB_IMPORT);
}
}
}
}
/**
* Validates the forth section of study and save it into study bean
*
* @param request
* @param response
* @throws Exception
*/
private void confirmStudy4() throws Exception {
FormProcessor fp = new FormProcessor(request);
Validator v = new Validator(request);
v.addValidation(
"conditions",
Validator.LENGTH_NUMERIC_COMPARISON,
NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO,
500);
v.addValidation(
"keywords",
Validator.LENGTH_NUMERIC_COMPARISON,
NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO,
255);
v.addValidation(
"eligibility",
Validator.LENGTH_NUMERIC_COMPARISON,
NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO,
500);
errors = v.validate();
if (fp.getInt("expectedTotalEnrollment") <= 0) {
Validator.addError(
errors,
"expectedTotalEnrollment",
respage.getString("expected_total_enrollment_must_be_a_positive_number"));
}
StudyBean newStudy = (StudyBean) session.getAttribute("newStudy");
newStudy.setConditions(fp.getString("conditions"));
newStudy.setKeywords(fp.getString("keywords"));
newStudy.setEligibility(fp.getString("eligibility"));
newStudy.setGender(fp.getString("gender"));
newStudy.setAgeMax(fp.getString("ageMax"));
newStudy.setAgeMin(fp.getString("ageMin"));
newStudy.setHealthyVolunteerAccepted(fp.getBoolean("healthyVolunteerAccepted"));
newStudy.setExpectedTotalEnrollment(fp.getInt("expectedTotalEnrollment"));
session.setAttribute("newStudy", newStudy);
request.setAttribute("facRecruitStatusMap", CreateStudyServlet.facRecruitStatusMap);
if (errors.isEmpty()) {
forwardPage(Page.UPDATE_STUDY6);
} else {
request.setAttribute("formMessages", errors);
forwardPage(Page.UPDATE_STUDY5);
}
}
@Override
public void processRequest() throws Exception {
FormProcessor fp = new FormProcessor(request);
int studySubId = fp.getInt(STUDY_SUB_ID, true);
int eventCRFId = fp.getInt(EVENT_CRF_ID);
String action = request.getParameter("action");
StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource());
EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
StudyDAO sdao = new StudyDAO(sm.getDataSource());
if (eventCRFId == 0) {
addPageMessage(respage.getString("please_choose_an_event_CRF_to_delete"));
request.setAttribute("id", new Integer(studySubId).toString());
forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET);
} else {
EventCRFBean eventCRF = (EventCRFBean) ecdao.findByPK(eventCRFId);
StudySubjectBean studySub = (StudySubjectBean) subdao.findByPK(studySubId);
request.setAttribute("studySub", studySub);
// construct info needed on view event crf page
CRFDAO cdao = new CRFDAO(sm.getDataSource());
CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
int crfVersionId = eventCRF.getCRFVersionId();
CRFBean cb = cdao.findByVersionId(crfVersionId);
eventCRF.setCrf(cb);
CRFVersionBean cvb = (CRFVersionBean) cvdao.findByPK(crfVersionId);
eventCRF.setCrfVersion(cvb);
// then get the definition so we can call
// DisplayEventCRFBean.setFlags
int studyEventId = eventCRF.getStudyEventId();
StudyEventBean event = (StudyEventBean) sedao.findByPK(studyEventId);
int studyEventDefinitionId = sedao.getDefinitionIdFromStudyEventId(studyEventId);
StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
StudyEventDefinitionBean sed =
(StudyEventDefinitionBean) seddao.findByPK(studyEventDefinitionId);
event.setStudyEventDefinition(sed);
request.setAttribute("event", event);
EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
StudyBean study = (StudyBean) sdao.findByPK(studySub.getStudyId());
EventDefinitionCRFBean edc =
edcdao.findByStudyEventDefinitionIdAndCRFId(study, studyEventDefinitionId, cb.getId());
DisplayEventCRFBean dec = new DisplayEventCRFBean();
dec.setEventCRF(eventCRF);
dec.setFlags(eventCRF, ub, currentRole, edc.isDoubleEntry());
// find all item data
ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
dnDao = new DiscrepancyNoteDAO(sm.getDataSource());
ArrayList<ItemDataBean> itemData = iddao.findAllByEventCRFId(eventCRF.getId());
request.setAttribute("items", itemData);
if ("confirm".equalsIgnoreCase(action)) {
request.setAttribute("displayEventCRF", dec);
forwardPage(Page.DELETE_EVENT_CRF);
} else {
logger.info("submit to delete the event CRF from event");
// OC-6303 Deleting Event CRF resets Show / Hide logic
// delete records from DynamicItemForm and DynamicItemGroup
getDynamicsItemFormMetadataDao().delete(eventCRFId);
getDynamicsItemGroupMetadataDao().delete(eventCRFId);
eventCRF.setOldStatus(eventCRF.getStatus());
eventCRF.setStatus(Status.RESET);
eventCRF.setUpdater(ub);
ecdao.update(eventCRF);
for (ItemDataBean itemdata : itemData) {
// OC-6343 Rule behaviour must be reset if an Event CRF is deleted
// delete the records from ruleActionRunLogDao
getRuleActionRunLogDao().delete(itemdata.getId());
// OC-6344 Notes & Discrepancies must be set to "closed" when event CRF is deleted
// parentDiscrepancyNoteList is the list of the parent DNs records only
ArrayList<DiscrepancyNoteBean> parentDiscrepancyNoteList =
getDnDao().findParentNotesOnlyByItemData(itemdata.getId());
for (DiscrepancyNoteBean parentDiscrepancyNote : parentDiscrepancyNoteList) {
if (parentDiscrepancyNote.getResolutionStatusId()
!= 4) { // if the DN's resolution status is not set to Closed
String description = resword.getString("dn_auto-closed_description");
String detailedNotes = resword.getString("dn_auto_closed_detailed_notes");
// create new DN record , new DN Map record , also update the parent record
createDiscrepancyNoteBean(
description, detailedNotes, itemdata.getId(), study, ub, parentDiscrepancyNote);
}
}
iddao = new ItemDataDAO(sm.getDataSource());
ifmdao = new ItemFormMetadataDAO(sm.getDataSource());
ItemDataBean idBean = (ItemDataBean) iddao.findByPK(itemdata.getId());
ItemFormMetadataBean ifmBean =
ifmdao.findByItemIdAndCRFVersionId(idBean.getItemId(), crfVersionId);
// Updating Dn_item_data_map actovated column into false for the existing DNs
ArrayList<DiscrepancyNoteBean> dnBeans =
getDnDao().findExistingNotesForItemData(itemdata.getId());
if (dnBeans.size() != 0) {
DiscrepancyNoteBean dnBean = new DiscrepancyNoteBean();
dnBean.setEntityId(itemdata.getId());
dnBean.setActivated(false);
getDnDao().updateDnMapActivation(dnBean);
}
// Default Values are not addressed
itemdata.setValue("");
itemdata.setOldStatus(itemdata.getStatus());
itemdata.setOwner(ub);
itemdata.setStatus(Status.AVAILABLE);
itemdata.setUpdater(ub);
iddao.updateUser(itemdata);
iddao.update(itemdata);
}
// OC-6291 event_crf status change
eventCRF.setOldStatus(eventCRF.getStatus());
eventCRF.setStatus(Status.AVAILABLE);
eventCRF.setUpdater(ub);
ecdao.update(eventCRF);
if (event.getSubjectEventStatus().isCompleted()
|| event.getSubjectEventStatus().isSigned()) {
event.setSubjectEventStatus(SubjectEventStatus.DATA_ENTRY_STARTED);
event.setUpdater(ub);
sedao = new StudyEventDAO(sm.getDataSource());
sedao.update(event);
}
String emailBody =
respage.getString("the_event_CRF")
+ cb.getName()
+ respage.getString("has_been_deleted_from_the_event")
+ event.getStudyEventDefinition().getName()
+ ". "
+ respage.getString("has_been_deleted_from_the_event_cont");
addPageMessage(emailBody);
// sendEmail(emailBody);
request.setAttribute("id", new Integer(studySubId).toString());
forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET);
}
}
}
@Override
public void processRequest() throws Exception {
SubjectDAO sdao = new SubjectDAO(sm.getDataSource());
FormProcessor fp = new FormProcessor(request);
int subjectId = fp.getInt("id");
String action = fp.getString("action");
if (subjectId == 0 || StringUtil.isBlank(action)) {
addPageMessage(respage.getString("please_choose_a_subject_to_remove"));
forwardPage(Page.SUBJECT_LIST_SERVLET);
} else {
SubjectBean subject = (SubjectBean) sdao.findByPK(subjectId);
// find all study subjects
StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
ArrayList studySubs = ssdao.findAllBySubjectId(subjectId);
// find study events
StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
ArrayList events = sedao.findAllBySubjectId(subjectId);
if ("confirm".equalsIgnoreCase(action)) {
request.setAttribute("subjectToRemove", subject);
request.setAttribute("studySubs", studySubs);
request.setAttribute("events", events);
forwardPage(Page.REMOVE_SUBJECT);
} else {
logger.info("submit to remove the subject");
// change all statuses to deleted
subject.setStatus(Status.DELETED);
subject.setUpdater(ub);
subject.setUpdatedDate(new Date());
sdao.update(subject);
// remove subject references from study
for (int i = 0; i < studySubs.size(); i++) {
StudySubjectBean studySub = (StudySubjectBean) studySubs.get(i);
if (!studySub.getStatus().equals(Status.DELETED)) {
studySub.setStatus(Status.AUTO_DELETED);
studySub.setUpdater(ub);
studySub.setUpdatedDate(new Date());
ssdao.update(studySub);
}
}
EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
for (int j = 0; j < events.size(); j++) {
StudyEventBean event = (StudyEventBean) events.get(j);
if (!event.getStatus().equals(Status.DELETED)) {
event.setStatus(Status.AUTO_DELETED);
event.setUpdater(ub);
event.setUpdatedDate(new Date());
sedao.update(event);
ArrayList eventCRFs = ecdao.findAllByStudyEvent(event);
ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
for (int k = 0; k < eventCRFs.size(); k++) {
EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(k);
if (!eventCRF.getStatus().equals(Status.DELETED)) {
eventCRF.setStatus(Status.AUTO_DELETED);
eventCRF.setUpdater(ub);
eventCRF.setUpdatedDate(new Date());
ecdao.update(eventCRF);
// remove all the item data
ArrayList itemDatas = iddao.findAllByEventCRFId(eventCRF.getId());
for (int a = 0; a < itemDatas.size(); a++) {
ItemDataBean item = (ItemDataBean) itemDatas.get(a);
if (!item.getStatus().equals(Status.DELETED)) {
item.setStatus(Status.AUTO_DELETED);
item.setUpdater(ub);
item.setUpdatedDate(new Date());
iddao.update(item);
}
}
}
}
}
}
String emailBody =
respage.getString("the_subject")
+ " "
+ respage.getString("has_been_removed_succesfully");
addPageMessage(emailBody);
// sendEmail(emailBody);
forwardPage(Page.SUBJECT_LIST_SERVLET);
}
}
}
/*
* (non-Javadoc)
*
* @see org.akaza.openclinica.control.core.SecureController#mayProceed()
*/
@Override
protected void mayProceed(HttpServletRequest request, HttpServletResponse response)
throws InsufficientPermissionException {
checkStudyLocked(
Page.LIST_STUDY_SUBJECTS, respage.getString("current_study_locked"), request, response);
checkStudyFrozen(
Page.LIST_STUDY_SUBJECTS, respage.getString("current_study_frozen"), request, response);
UserAccountBean ub = (UserAccountBean) request.getSession().getAttribute(USER_BEAN_NAME);
StudyUserRoleBean currentRole =
(StudyUserRoleBean) request.getSession().getAttribute("userRole");
HttpSession session = request.getSession();
locale = request.getLocale();
// < respage =
// ResourceBundle.getBundle("org.akaza.openclinica.i18n.page_messages",
// locale);
// < restext =
// ResourceBundle.getBundle("org.akaza.openclinica.i18n.notes",locale);
// <
// resexception=ResourceBundle.getBundle(
// "org.akaza.openclinica.i18n.exceptions",locale);
// < resword =
// ResourceBundle.getBundle("org.akaza.openclinica.i18n.words",locale);
getInputBeans(request);
EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
FormProcessor fp = new FormProcessor(request);
SectionBean sb = (SectionBean) request.getAttribute(SECTION_BEAN);
// BWP 12/2/07>> The following COUNT_VALIDATE session attribute is not
// accessible,
// for unknown reasons (threading problems?), when
// double-data entry displays error messages; it's value is always 0; so
// I have to create my
// own session variable here to keep track of DDE stages
// We'll go by the SectionBean's ordinal first
int tabNumber = 1;
if (sb != null) {
tabNumber = sb.getOrdinal();
}
// if tabNumber still isn't valid, check the "tab" parameter
if (tabNumber < 1) {
if (fp == null) {
fp = new FormProcessor(request);
}
String tab = fp.getString("tab");
if (tab == null || tab.length() < 1) {
tabNumber = 1;
} else {
tabNumber = fp.getInt("tab");
}
}
SectionDAO sectionDao = new SectionDAO(getDataSource());
int crfVersionId = ecb.getCRFVersionId();
int eventCRFId = ecb.getId();
ArrayList sections = sectionDao.findAllByCRFVersionId(crfVersionId);
int sectionSize = sections.size();
HttpSession mySession = request.getSession();
DoubleDataProgress doubleDataProgress =
(DoubleDataProgress) mySession.getAttribute(DDE_PROGESS);
if (doubleDataProgress == null || doubleDataProgress.getEventCRFId() != eventCRFId) {
doubleDataProgress = new DoubleDataProgress(sectionSize, eventCRFId);
mySession.setAttribute(DDE_PROGESS, doubleDataProgress);
}
boolean hasVisitedSection = doubleDataProgress.getSectionVisited(tabNumber, eventCRFId);
// setting up one-time validation here
// admit that it's an odd place to put it, but where else?
// placing it in dataentryservlet is creating too many counts
int keyId = ecb.getId();
Integer count = (Integer) session.getAttribute(COUNT_VALIDATE + keyId);
if (count != null) {
count++;
session.setAttribute(COUNT_VALIDATE + keyId, count);
logger.info("^^^just set count to session: " + count);
} else {
count = 0;
session.setAttribute(COUNT_VALIDATE + keyId, count);
logger.info("***count not found, set to session: " + count);
}
DataEntryStage stage = ecb.getStage();
if (stage.equals(DataEntryStage.INITIAL_DATA_ENTRY_COMPLETE) && !hasVisitedSection) {
// if the user has not entered this section yet in Double Data
// Entry, then
// set a flag that default values should be shown in the form
request.setAttribute(DDE_ENTERED, true);
}
// Now update the session attribute
doubleDataProgress.setSectionVisited(eventCRFId, tabNumber, true);
mySession.setAttribute("doubleDataProgress", doubleDataProgress);
// StudyEventStatus status =
Role r = currentRole.getRole();
session.setAttribute("mayProcessUploading", "true");
// if (!SubmitDataServlet.maySubmitData(ub, currentRole)) {
// this.session.setAttribute("mayProcessUploading", "false");
// String exceptionName = resexception.getString("no_permission_validation");
// String noAccessMessage =
// resexception.getString("not_perfom_validation_syscontact");
//
// addPageMessage(noAccessMessage);
// throw new InsufficientPermissionException(Page.MENU, exceptionName, "1");
// }
//
// if (stage.equals(DataEntryStage.INITIAL_DATA_ENTRY_COMPLETE)) {
// if (userIsOwnerAndLessThanTwelveHoursHavePassed() && !r.equals(Role.STUDYDIRECTOR)
// && !r.equals(Role.COORDINATOR)) {
// this.session.setAttribute("mayProcessUploading", "false");
// addPageMessage(respage.getString("since_perform_data_entry"));
// throw new InsufficientPermissionException(Page.LIST_STUDY_SUBJECTS_SERVLET,
// resexception.getString("owner_attempting_double_data_entry"), "1");
// }
// } else if (stage.equals(DataEntryStage.DOUBLE_DATA_ENTRY)) {
// if (ub.getId() != ecb.getValidatorId() && !r.equals(Role.STUDYDIRECTOR) &&
// !r.equals(Role.COORDINATOR)) {
// this.session.setAttribute("mayProcessUploading", "false");
// addPageMessage(respage.getString("validation_has_already_begun"));
// throw new InsufficientPermissionException(Page.LIST_STUDY_SUBJECTS_SERVLET,
// resexception
// .getString("non_validator_attempting_double_data_entry"), "1");
// }
// } else {
// this.session.setAttribute("mayProcessUploading", "false");
// addPageMessage(respage.getString("not_perform_validation"));
// throw new InsufficientPermissionException(Page.LIST_STUDY_SUBJECTS_SERVLET,
// resexception.getString("using_double_data_entry_CRF_completed"), "1");
// }
return;
}
public SimpleTrigger generateTrigger(
FormProcessor fp, UserAccountBean userAccount, StudyBean study, String locale) {
Date startDateTime = fp.getDateTime(DATE_START_JOB);
// check the above?
int datasetId = fp.getInt(DATASET_ID);
String period = fp.getString(PERIOD);
String email = fp.getString(EMAIL);
String jobName = fp.getString(JOB_NAME);
String jobDesc = fp.getString(JOB_DESC);
String spss = fp.getString(SPSS);
String tab = fp.getString(TAB);
String cdisc = fp.getString(CDISC);
String cdisc12 = fp.getString(ExampleSpringJob.CDISC12);
String cdisc13 = fp.getString(ExampleSpringJob.CDISC13);
String cdisc13oc = fp.getString(ExampleSpringJob.CDISC13OC);
BigInteger interval = new BigInteger("0");
if ("monthly".equalsIgnoreCase(period)) {
interval = new BigInteger("2419200000"); // how many
// milliseconds in
// a month? should
// be 24192000000
} else if ("weekly".equalsIgnoreCase(period)) {
interval = new BigInteger("604800000"); // how many
// milliseconds in
// a week? should
// be 6048000000
} else { // daily
interval = new BigInteger("86400000"); // how many
// milliseconds in a
// day?
}
// set up and commit job here
SimpleTrigger trigger = new SimpleTrigger(jobName, "DEFAULT", 64000, interval.longValue());
// set the job detail name,
// based on our choice of format above
// what if there is more than one detail?
// what is the number of times it should repeat?
// arbitrary large number, 64K should be enough :)
trigger.setDescription(jobDesc);
// set just the start date
trigger.setStartTime(startDateTime);
trigger.setName(jobName); // + datasetId);
trigger.setGroup("DEFAULT"); // + datasetId);
trigger.setMisfireInstruction(
SimpleTrigger.MISFIRE_INSTRUCTION_RESCHEDULE_NEXT_WITH_EXISTING_COUNT);
// set job data map
JobDataMap jobDataMap = new JobDataMap();
jobDataMap.put(DATASET_ID, datasetId);
jobDataMap.put(PERIOD, period);
jobDataMap.put(EMAIL, email);
jobDataMap.put(TAB, tab);
jobDataMap.put(CDISC, cdisc);
jobDataMap.put(ExampleSpringJob.CDISC12, cdisc12);
jobDataMap.put(ExampleSpringJob.LOCALE, locale);
// System.out.println("found 1.2: " +
// jobDataMap.get(ExampleSpringJob.CDISC12));
jobDataMap.put(ExampleSpringJob.CDISC13, cdisc13);
// System.out.println("found 1.3: " +
// jobDataMap.get(ExampleSpringJob.CDISC13));
jobDataMap.put(ExampleSpringJob.CDISC13OC, cdisc13oc);
// System.out.println("found 1.3oc: " +
// jobDataMap.get(ExampleSpringJob.CDISC13OC));
jobDataMap.put(SPSS, spss);
jobDataMap.put(USER_ID, userAccount.getId());
// StudyDAO studyDAO = new StudyDAO();
jobDataMap.put(STUDY_ID, study.getId());
jobDataMap.put(STUDY_NAME, study.getName());
jobDataMap.put(STUDY_OID, study.getOid());
trigger.setJobDataMap(jobDataMap);
// trigger.setRepeatInterval(interval.longValue());
// System.out.println("default for volatile: " + trigger.isVolatile());
trigger.setVolatility(false);
return trigger;
}
@Override
public void processRequest() throws Exception {
UserAccountDAO udao = new UserAccountDAO(sm.getDataSource());
StudyDAO sdao = new StudyDAO(sm.getDataSource());
String name = request.getParameter("name");
String studyIdString = request.getParameter("studyId");
if (StringUtil.isBlank(name) || StringUtil.isBlank(studyIdString)) {
addPageMessage(respage.getString("please_choose_a_user_to_set_role_for"));
forwardPage(Page.LIST_USER_IN_STUDY_SERVLET);
} else {
String action = request.getParameter("action");
FormProcessor fp = new FormProcessor(request);
UserAccountBean user = (UserAccountBean) udao.findByUserName(name);
StudyBean userStudy = (StudyBean) sdao.findByPK(fp.getInt("studyId"));
if ("confirm".equalsIgnoreCase(action)) {
int studyId = Integer.valueOf(studyIdString.trim()).intValue();
request.setAttribute("user", user);
StudyUserRoleBean uRole = udao.findRoleByUserNameAndStudyId(name, studyId);
uRole.setStudyName(userStudy.getName());
request.setAttribute("uRole", uRole);
ArrayList roles = Role.toArrayList();
roles.remove(Role.ADMIN); // admin is not a user role, only used for tomcat
StudyBean studyBean = (StudyBean) sdao.findByPK(uRole.getStudyId());
if (currentStudy.getParentStudyId() > 0) {
roles.remove(Role.COORDINATOR);
roles.remove(Role.STUDYDIRECTOR);
} else if (studyBean.getParentStudyId() > 0) {
roles.remove(Role.COORDINATOR);
roles.remove(Role.STUDYDIRECTOR);
// TODO: redo this fix
Role r = Role.RESEARCHASSISTANT;
r.setDescription("site_Data_Entry_Person");
roles.remove(Role.RESEARCHASSISTANT);
roles.add(r);
Role ri = Role.INVESTIGATOR;
ri.setDescription("site_investigator");
roles.remove(Role.INVESTIGATOR);
roles.add(ri);
}
request.setAttribute("roles", roles);
forwardPage(Page.SET_USER_ROLE_IN_STUDY);
} else {
// set role
String userName = fp.getString("name");
int studyId = fp.getInt("studyId");
int roleId = fp.getInt("roleId");
StudyUserRoleBean sur = new StudyUserRoleBean();
sur.setName(userName);
sur.setRole(Role.get(roleId));
sur.setStudyId(studyId);
sur.setStudyName(userStudy.getName());
sur.setStatus(Status.AVAILABLE);
sur.setUpdater(ub);
sur.setUpdatedDate(new Date());
udao.updateStudyUserRole(sur, userName);
addPageMessage(sendEmail(user, sur));
forwardPage(Page.LIST_USER_IN_STUDY_SERVLET);
}
}
}
/*
* (non-Javadoc)
*
* @see org.akaza.openclinica.control.core.SecureController#processRequest()
*/
@Override
protected void processRequest() throws Exception {
FormProcessor fp = new FormProcessor(request);
int noteId = fp.getInt(INPUT_NOTE_ID);
String module = (String) session.getAttribute("module");
// Integer subjectId = (Integer) session.getAttribute("subjectId");
StudySubjectDAO studySubjectDAO = new StudySubjectDAO(sm.getDataSource());
DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(sm.getDataSource());
dndao.setFetchMapping(true);
// check that the note exists
DiscrepancyNoteBean discrepancyNoteBean = (DiscrepancyNoteBean) dndao.findByPK(noteId);
if (!discrepancyNoteBean.isActive()) {
throw new InconsistentStateException(
Page.MANAGE_STUDY_SERVLET,
resexception.getString("you_are_trying_resolve_discrepancy_not_exist"));
}
// check that the note has not already been closed
ArrayList children = dndao.findAllByParent(discrepancyNoteBean);
discrepancyNoteBean.setChildren(children);
// This logic has been reverted, issue-7459
// if (parentNoteIsClosed(discrepancyNoteBean)) {
// throw new InconsistentStateException(Page.VIEW_DISCREPANCY_NOTES_IN_STUDY_SERVLET,
// respage
// .getString("the_discrepancy_choose_has_been_closed_resolved_create_new"));
// }
// all clear, send the user to the resolved screen
String entityType = discrepancyNoteBean.getEntityType().toLowerCase();
discrepancyNoteBean.setResStatus(
ResolutionStatus.get(discrepancyNoteBean.getResolutionStatusId()));
discrepancyNoteBean.setDisType(
DiscrepancyNoteType.get(discrepancyNoteBean.getDiscrepancyNoteTypeId()));
// BWP 03/17/2009 3166: if it's not an ItemData type note, redirect
// Monitors to View Subject or
// View Study Events <<
if (currentRole.getRole().equals(Role.MONITOR)
&& !"itemdata".equalsIgnoreCase(entityType)
&& !"eventcrf".equalsIgnoreCase(entityType)) {
redirectMonitor(module, discrepancyNoteBean);
return;
}
// >>
// If Study is Frozen or Locked
if (currentStudy.getStatus().isFrozen()
&& !"itemdata".equalsIgnoreCase(entityType)
&& !"eventcrf".equalsIgnoreCase(entityType)) {
redirectMonitor(module, discrepancyNoteBean);
return;
}
boolean toView = false;
boolean isCompleted = false;
if ("itemdata".equalsIgnoreCase(entityType)) {
ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
ItemDataBean idb = (ItemDataBean) iddao.findByPK(discrepancyNoteBean.getEntityId());
EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
EventCRFBean ecb = (EventCRFBean) ecdao.findByPK(idb.getEventCRFId());
StudySubjectBean studySubjectBean =
(StudySubjectBean) studySubjectDAO.findByPK(ecb.getStudySubjectId());
discrepancyNoteBean.setSubjectId(studySubjectBean.getId());
discrepancyNoteBean.setItemId(idb.getItemId());
if (ecb.getStatus().equals(Status.UNAVAILABLE)) {
isCompleted = true;
}
toView = true; // we want to go to view note page if the note is
// for item data
}
// logger.info("set up pop up url: " + createNoteURL);
// System.out.println("set up pop up url: " + createNoteURL);
boolean goNext =
prepareRequestForResolution(
request, sm.getDataSource(), currentStudy, discrepancyNoteBean, isCompleted);
Page p = getPageForForwarding(discrepancyNoteBean, isCompleted);
// logger.info("found page for forwarding: " + p.getFileName());
if (p == null) {
throw new InconsistentStateException(
Page.VIEW_DISCREPANCY_NOTES_IN_STUDY_SERVLET,
resexception.getString("the_discrepancy_note_triying_resolve_has_invalid_type"));
} else {
if (p.getFileName().contains("?")) {
if (!p.getFileName().contains("fromViewNotes=1")) {
p.setFileName(p.getFileName() + "&fromViewNotes=1");
}
} else {
p.setFileName(p.getFileName() + "?fromViewNotes=1");
}
String createNoteURL =
CreateDiscrepancyNoteServlet.getAddChildURL(
discrepancyNoteBean, ResolutionStatus.CLOSED, true);
setPopUpURL(createNoteURL);
}
if (!goNext) {
setPopUpURL("");
addPageMessage(
respage.getString("you_may_not_perform_admin_edit_on_CRF_not_completed_by_user"));
p = Page.VIEW_DISCREPANCY_NOTES_IN_STUDY_SERVLET;
}
forwardPage(p);
}
