@Test
public void testPostPublishAndDelete() throws Throwable {
URL fileUrl = getClass().getClassLoader().getResource("net/toxbank/client/test/BII-I-1.zip");
Investigation newInvestigation = new Investigation();
newInvestigation.setSearchable(false);
RemoteTask task =
getToxBankClient()
.postInvestigation(
new File(fileUrl.toURI()),
new URL(INVESTIGATION_ROOT),
new ArrayList<PolicyRule>(0),
newInvestigation,
null);
task.waitUntilCompleted(1000);
URL postedURL = task.getResult();
System.out.println("Posted new investigation: " + postedURL);
Investigation investigation = getToxBankClient().getInvestigation(postedURL);
verifyBiiInvestigation(investigation, false);
TestCase.assertNotNull("Should have owner", investigation.getOwner());
TestCase.assertEquals(getUserUrl(), investigation.getOwner().getResourceURL().toString());
TestCase.assertNotNull("Should have a published status set", investigation.isPublished());
TestCase.assertEquals("Should not be published", Boolean.FALSE, investigation.isPublished());
task = getToxBankClient().publishInvestigation(investigation, true);
task.waitUntilCompleted(1000);
Investigation updatedInvestigation = getToxBankClient().getInvestigation(postedURL);
TestCase.assertEquals(Boolean.TRUE, updatedInvestigation.isPublished());
System.out.println("Deleting investigation: " + investigation.getResourceURL());
getToxBankClient().deleteInvestigation(investigation.getResourceURL());
System.out.println("Deleted investigation: " + investigation.getResourceURL());
}
@Test
public void testPostAndDeleteWithPermissions() throws Throwable {
URL fileUrl = getClass().getClassLoader().getResource("net/toxbank/client/test/BII-I-1.zip");
List<PolicyRule> accessRights = createPolicyRules();
Investigation newInvestigation = new Investigation();
newInvestigation.setSearchable(false);
RemoteTask task =
getToxBankClient()
.postInvestigation(
new File(fileUrl.toURI()),
new URL(INVESTIGATION_ROOT),
accessRights,
newInvestigation,
null);
task.waitUntilCompleted(1000);
URL postedURL = task.getResult();
System.out.println("Posted new investigation: " + postedURL);
Investigation investigation = getToxBankClient().getInvestigation(postedURL);
verifyBiiInvestigation(investigation, false);
verifyPolicyRules(investigation);
String userUrl = getUserUrl();
TestCase.assertNotNull("Should have owner", investigation.getOwner());
TestCase.assertEquals(userUrl, investigation.getOwner().getResourceURL().toString());
User owner = new User();
URL ownerUrl = new URL(userUrl);
owner.setResourceURL(ownerUrl);
List<TimestampedUrl> userUrls =
getToxBankClient().listTimestampedInvestigations(new URL(INVESTIGATION_ROOT), owner);
boolean hasPostedUrl = false;
for (TimestampedUrl url : userUrls) {
if ((postedURL.toString() + "/").equals(url.getUrl().toString())) {
hasPostedUrl = true;
}
}
Assert.assertTrue(
"The loaded investigation should be included in the owner's list", hasPostedUrl);
System.out.println("Deleting investigation: " + investigation.getResourceURL());
getToxBankClient().deleteInvestigation(investigation.getResourceURL());
System.out.println("Deleted investigation: " + investigation.getResourceURL());
}
@Test
public void testPostAndUpdate() throws Throwable {
URL fileUrl = getClass().getClassLoader().getResource("net/toxbank/client/test/BII-I-1.zip");
Investigation newInvestigation = new Investigation();
newInvestigation.setSearchable(false);
RemoteTask task =
getToxBankClient()
.postInvestigation(
new File(fileUrl.toURI()),
new URL(INVESTIGATION_ROOT),
new ArrayList<PolicyRule>(0),
newInvestigation,
null);
task.waitUntilCompleted(1000);
URL postedURL = task.getResult();
System.out.println("Posted new investigation: " + postedURL);
Investigation investigation = getToxBankClient().getInvestigation(postedURL);
verifyBiiInvestigation(investigation, false);
URL newFileUrl =
getClass().getClassLoader().getResource("net/toxbank/client/test/BII-I-1-smiller.zip");
RemoteTask newTask =
getToxBankClient()
.updateInvestigation(
new File(newFileUrl.toURI()), investigation, new ArrayList<PolicyRule>(0), null);
newTask.waitUntilCompleted(1000);
URL postedUpdateURL = task.getResult();
Assert.assertEquals(
"Should have same update url as original posted url", postedURL, postedUpdateURL);
System.out.println("Updated investigation: " + investigation.getResourceURL());
Investigation updatedInvestigation =
getToxBankClient().getInvestigation(investigation.getResourceURL());
TestCase.assertEquals(
"Should have new title in updated investigation",
"Growth control of the eukaryote cell: a systems biology study in yeast - updated",
updatedInvestigation.getTitle());
TestCase.assertNotNull(
"Updated investigation should have owner", updatedInvestigation.getOwner());
TestCase.assertEquals(
"Updated investigation should have same owner",
getUserUrl(),
updatedInvestigation.getOwner().getResourceURL().toString());
System.out.println("Deleting investigation: " + investigation.getResourceURL());
getToxBankClient().deleteInvestigation(investigation.getResourceURL());
System.out.println("Deleted investigation: " + investigation.getResourceURL());
}
@Test
public void testPostAndUpdateRemovingPermissions() throws Throwable {
URL fileUrl = getClass().getClassLoader().getResource("net/toxbank/client/test/BII-I-1.zip");
List<PolicyRule> accessRights = createPolicyRules();
Investigation newInvestigation = new Investigation();
newInvestigation.setSearchable(false);
RemoteTask task =
getToxBankClient()
.postInvestigation(
new File(fileUrl.toURI()),
new URL(INVESTIGATION_ROOT),
accessRights,
newInvestigation,
null);
task.waitUntilCompleted(1000);
URL postedURL = task.getResult();
System.out.println("Posted new investigation: " + postedURL);
Investigation investigation = getToxBankClient().getInvestigation(postedURL);
verifyBiiInvestigation(investigation, false);
verifyPolicyRules(investigation);
RemoteTask newTask =
getToxBankClient().updateInvestigation(investigation, new ArrayList<PolicyRule>(0));
newTask.waitUntilCompleted(1000);
URL postedUpdateURL = task.getResult();
Assert.assertEquals(
"Should have same update url as original posted url", postedURL, postedUpdateURL);
System.out.println("Updated investigation: " + investigation.getResourceURL());
Investigation updatedInvestigation =
getToxBankClient().getInvestigation(investigation.getResourceURL());
verifyBiiInvestigation(updatedInvestigation, false);
TestCase.assertNotNull(
"Updated investigation should have owner", updatedInvestigation.getOwner());
TestCase.assertEquals(
"Updated investigation should have same owner",
getUserUrl(),
updatedInvestigation.getOwner().getResourceURL().toString());
verifyOwnerOnlyPolicyRules(updatedInvestigation);
System.out.println("Deleting investigation: " + investigation.getResourceURL());
getToxBankClient().deleteInvestigation(investigation.getResourceURL());
System.out.println("Deleted investigation: " + investigation.getResourceURL());
}