Exemple #1
0
  @Override
  @SuppressWarnings("unchecked")
  protected void process(File csvFile) throws Exception {

    Transaction t = createTransaction();
    Query q = createQuery(t);

    List<Object[]> list = (List<Object[]>) q.list();
    if (list.size() < 1) throw new EmptyResultException();

    ArrayList<String> row;
    Table out = new Table();

    for (Object[] o : list) {
      TestResult tr = (TestResult) o[0];
      PatientAttributeValue pc = (PatientAttributeValue) o[1];
      PatientAttributeValue bdt = (PatientAttributeValue) o[2];
      Date bd = DateUtils.parseDate(bdt.getValue());

      Date tDate = tr.getTestDate();
      int testCode = TestCode.T4.getCode();

      if (bd != null
          && tDate != null
          && DateUtils.getDateOffset(bd, Calendar.YEAR, 15).after(tDate)) {
        // < 15 years old at time of test
        testCode = TestCode.T4PERCENT.getCode();
        if (!tr.getTest()
            .getTestType()
            .getDescription()
            .equals(StandardObjects.getCd4PercentageTestType().getDescription())) continue;
      } else {
        if (tr.getTest()
            .getTestType()
            .getDescription()
            .equals(StandardObjects.getCd4PercentageTestType().getDescription())) continue;
      }

      String value = tr.getValue();

      row = new ArrayList<String>();

      row.add(getCentreName());
      row.add(OriginCode.ARC.getCode() + "");
      row.add(pc.getValue());
      row.add(getFormattedDate(tDate));
      row.add(TypeOfInformationCode.LAB_RESULT.getCode() + "");
      row.add(testCode + "");
      row.add(getFormattedDecimal(value, 0, 0));
      row.add("");

      out.addRow(row);
    }

    t.commit();
    out.exportAsCsv(new FileOutputStream(csvFile), ';', false);
  }
Exemple #2
0
 public ReportContainer(File summaryCsvFile) {
   super();
   try {
     Table csv = Table.readTable(summaryCsvFile.getAbsolutePath());
     if (csv.numColumns() == 2) {
       initPieChart(csv);
     }
   } catch (FileNotFoundException e) {
     e.printStackTrace();
   } catch (UnsupportedEncodingException e) {
     e.printStackTrace();
   }
 }
  public static void main(String[] args) {
    Table nationalityLIS =
        Utils.readTable(
            "/home/plibin0/myWorkspace/regadb-io-db/src/net/sf/regadb/io/db/ghb/mapping/LIS-nationality.csv");
    Table nationalityDefault =
        Utils.readTable(
            "/home/plibin0/myWorkspace/regadb-analyses/io-assist-files/countrylist.csv");

    int CLISCode = Utils.findColumn(nationalityLIS, "codePost");
    int CLISName = Utils.findColumn(nationalityLIS, "internationaleOmschrijving");
    int CDefaultCode = Utils.findColumn(nationalityDefault, "ISO 3166-1 2 Letter Code");
    int CDefaultName = Utils.findColumn(nationalityDefault, "Common Name");
    List<Attribute> regadbAttributesList = Utils.prepareRegaDBAttributes();
    Attribute countryOfOrigin = Utils.selectAttribute("Country of origin", regadbAttributesList);

    for (int i = 1; i < nationalityLIS.numRows(); i++) {
      String LISCode = nationalityLIS.valueAt(CLISCode, i);
      String LISName = nationalityLIS.valueAt(CLISName, i);
      String match = "";
      for (int j = 1; j < nationalityDefault.numRows(); j++) {
        String defaultCode = nationalityDefault.valueAt(CDefaultCode, j);
        String defaultName = nationalityDefault.valueAt(CDefaultName, j);
        if (LISCode.trim().toLowerCase().equals(defaultCode.trim().toLowerCase())) {
          match = defaultName;
          break;
        }
      }

      System.err.println("\"" + LISCode + "\"" + "," + "\"" + match + "\"");
    }
  }
Exemple #4
0
  public WAbstractItemModel readFromCsv(Table csv) {
    WAbstractItemModel model = new WStandardItemModel();
    for (int r = 0; r < csv.numRows(); r++) {
      if (r != 0) model.insertRow(r - 1);

      for (int c = 0; c < csv.numColumns(); c++) {
        String value = csv.valueAt(c, r);
        if (r == 0) {
          model.insertColumn(c);
          model.setHeaderData(c, Orientation.Horizontal, value);
        } else {
          try {
            Double d = Double.valueOf(value);
            model.setData(r - 1, c, d);
          } catch (NumberFormatException e) {
            model.setData(r - 1, c, value);
          }
        }
      }
    }
    return model;
  }