/** Constructor */
public TcgaSurvivalDataProcessor() throws Exception {
_parser = new TcgaClinicalTabDataParser(this);
_dependentVariableTransformer = GetDependentVariableTransformerFromConfig();
_survivalDataPointName =
Utilities.Config.GetStringValue(
"CONTINUOUS_DEPENDENT_VARIABLE_DATA_POINT_NAME", "ContinuousDependentVariable");
_lowRiskDescriptor =
Utilities.Config.GetStringValue("CONTINUOUS_DEPENDENT_VARIABLE_LOW_DESCRIPTOR", "LOW");
_highRiskDescriptor =
Utilities.Config.GetStringValue("CONTINUOUS_DEPENDENT_VARIABLE_HIGH_DESCRIPTOR", "HIGH");
}
private AbstractDependentVariableTransformer GetDependentVariableTransformerFromConfig()
throws Exception {
String className =
Utilities.Config.GetStringValue(
"DEPENDENT_VARIABLE_TRANSFORMER",
new MedianContinuousDependentVariableTransformer().getClass().getSimpleName());
return (AbstractDependentVariableTransformer)
((Constructor) Class.forName(className).getConstructor()).newInstance();
}