/*...............................................................................................................*/
public void setTableAndTaxa(MesquiteTable table, Taxa taxa) {
// if (this.data !=null)
// this.data.removeListener(this);
if (taxa != this.taxa) observedStates = null;
this.taxa = taxa;
matrixSourceTask.initialize(taxa);
this.table = table;
doCalcs();
}
public void doCalcs() {
if (bits != null) bits.clearAllBits();
if (taxa == null) return;
if (bits == null) bits = new Bits(taxa.getNumTaxa());
else bits.resetSize(taxa.getNumTaxa());
if (observedStates == null) {
tInfo = null;
observedStates = matrixSourceTask.getCurrentMatrix(taxa);
if (observedStates != null) {
captureCharacterDataFromObservedStates();
if (data != null) tInfo = data.getTaxaInfo(true);
}
}
if (observedStates == null) return;
for (int it = 0; it < taxa.getNumTaxa(); it++) {
if (hasData(it)) bits.setBit(it);
}
}