protected HashMap<Integer, ArrayList<Integer>> getSplitSelectionIndexes() {
HashMap<Integer, ArrayList<Object3DGui>> splitSelection = getSplitSelection();
HashMap<Integer, ArrayList<Integer>> res =
new HashMap<Integer, ArrayList<Integer>>(splitSelection.size());
for (Map.Entry<Integer, ArrayList<Object3DGui>> e : splitSelection.entrySet()) {
ArrayList<Integer> idxs = new ArrayList<Integer>(e.getValue().size());
for (Object3DGui o : e.getValue()) idxs.add(o.getLabel());
res.put(e.getKey(), idxs);
}
return res;
}
public void setSelectedObjectsFromDB() {
this.selectingObject = true;
this.list.clearSelection();
int offsetIdx = 0;
ArrayList<Integer> selectedIndices = new ArrayList<Integer>();
for (ObjectStructure s : this.currentChannels) {
BasicDBList selectedObjects =
Core.mongoConnector.getSelectedObjects(currentNucId, s.getIdx());
if (selectedObjects != null && !selectedObjects.isEmpty()) {
for (Object o : selectedObjects) selectedIndices.add((Integer) o + offsetIdx);
}
offsetIdx += s.getObjects().length;
}
if (!selectedIndices.isEmpty()) {
int[] selectedIdx = new int[selectedIndices.size()];
for (int i = 0; i < selectedIdx.length; i++) selectedIdx[i] = selectedIndices.get(i);
this.list.setSelectedIndices(selectedIdx);
}
this.selectingObject = false;
}
public void populateObjects() {
try {
this.listModel.removeAllElements();
if (currentChannels == null) {
return;
}
this.populatingObjects = true;
ArrayList<Integer> selection = null;
if (showSelection != null && showSelection.isSelected()) selection = new ArrayList<Integer>();
int currentIdx = 0;
for (ObjectStructure ass : currentChannels) {
Object3D[] os = ass.getObjects();
if (os != null) {
Object3DGui[] osg = new Object3DGui[os.length];
for (int i = 0; i < os.length; i++) osg[i] = new Object3DGui(os[i], ass);
if (layout instanceof ObjectManagerLayout
&& currentChannels.length == 1
&& !((ObjectManagerLayout) layout).getSortKey().equals("idx"))
this.sort(((ObjectManagerLayout) layout).getSortKey(), osg, ass.getIdx());
// System.out.println("populating objects.. nb objects:"+os.length);
for (Object3DGui o3D : osg) {
this.listModel.addElement(o3D);
if (selection != null && o3D.isInSelection()) selection.add(currentIdx);
currentIdx++;
}
// if (selection!=null) System.out.println("populating objects.. selection
// size:"+selection.size());
} // else System.out.println("no objects int channel:"+ass.getChannelName());
}
if (selection != null && !selection.isEmpty()) {
int[] sel = new int[selection.size()];
int i = 0;
for (int idx : selection) sel[i++] = idx;
list.setSelectedIndices(sel);
}
} catch (Exception e) {
exceptionPrinter.print(e, "", Core.GUIMode);
}
this.populatingObjects = false;
}
public void mergeSelectedObjects() {
this.populatingObjects = true;
HashMap<Integer, ArrayList<Object3DGui>> allObjects = getSplitSelection();
for (int channelIdx : allObjects.keySet()) {
ArrayList<Object3DGui> objects = allObjects.get(channelIdx);
if (objects != null && objects.size() >= 2) {
Collections.sort(objects);
Object3DGui o1 = objects.get(0);
for (int i = objects.size() - 1; i > 0; i--) {
Object3DGui o2 = objects.get(i);
o1.merge(o2);
listModel.removeElement(o2);
// IJ.log("merge:"+o1.getName()+ "::"+objects.get(i).getName()+ " channel:"+channelIdx);
}
o1.getChannel().createObjects();
if (autoSave) o1.getChannel().saveOutput();
ImagePlus img = o1.getChannel().getSegmented().getImagePlus();
if (img.isVisible()) {
img.updateAndDraw();
}
}
}
this.populatingObjects = false;
}