private void writePixels(String chunk, byte[] stream, int x, int y, int width, int height)
throws FormatException, IOException {
MetadataRetrieve r = getMetadataRetrieve();
int sizeC = getSamplesPerPixel();
String type = r.getPixelsType(series).toString();
int pixelType = FormatTools.pixelTypeFromString(type);
boolean signed = FormatTools.isSigned(pixelType);
if (!isFullPlane(x, y, width, height)) {
throw new FormatException("APNGWriter does not support writing tiles.");
}
ByteArrayOutputStream s = new ByteArrayOutputStream();
s.write(chunk.getBytes());
if (chunk.equals("fdAT")) {
s.write(DataTools.intToBytes(nextSequenceNumber++, false));
}
DeflaterOutputStream deflater = new DeflaterOutputStream(s);
int planeSize = stream.length / sizeC;
int rowLen = stream.length / height;
int bytesPerPixel = stream.length / (width * height * sizeC);
byte[] rowBuf = new byte[rowLen];
for (int i = 0; i < height; i++) {
deflater.write(0);
if (interleaved) {
if (littleEndian) {
for (int col = 0; col < width * sizeC; col++) {
int offset = (i * sizeC * width + col) * bytesPerPixel;
int pixel = DataTools.bytesToInt(stream, offset, bytesPerPixel, littleEndian);
DataTools.unpackBytes(pixel, rowBuf, col * bytesPerPixel, bytesPerPixel, false);
}
} else System.arraycopy(stream, i * rowLen, rowBuf, 0, rowLen);
} else {
int max = (int) Math.pow(2, bytesPerPixel * 8 - 1);
for (int col = 0; col < width; col++) {
for (int c = 0; c < sizeC; c++) {
int offset = c * planeSize + (i * width + col) * bytesPerPixel;
int pixel = DataTools.bytesToInt(stream, offset, bytesPerPixel, littleEndian);
if (signed) {
if (pixel < max) pixel += max;
else pixel -= max;
}
int output = (col * sizeC + c) * bytesPerPixel;
DataTools.unpackBytes(pixel, rowBuf, output, bytesPerPixel, false);
}
}
}
deflater.write(rowBuf);
}
deflater.finish();
byte[] b = s.toByteArray();
// write chunk length
out.writeInt(b.length - 4);
out.write(b);
// write checksum
out.writeInt(crc(b));
}
/* @see loci.formats.IFormatHandler#setId(String) */
public void setId(String id) throws FormatException, IOException {
super.setId(id);
if (out.length() == 0) {
MetadataRetrieve r = getMetadataRetrieve();
int width = r.getPixelsSizeX(series).getValue().intValue();
int height = r.getPixelsSizeY(series).getValue().intValue();
int bytesPerPixel = FormatTools.getBytesPerPixel(r.getPixelsType(series).toString());
int nChannels = getSamplesPerPixel();
boolean indexed = getColorModel() != null && (getColorModel() instanceof IndexColorModel);
littleEndian = !r.getPixelsBinDataBigEndian(series, 0);
// write 8-byte PNG signature
out.write(PNG_SIG);
// write IHDR chunk
out.writeInt(13);
byte[] b = new byte[17];
b[0] = 'I';
b[1] = 'H';
b[2] = 'D';
b[3] = 'R';
DataTools.unpackBytes(width, b, 4, 4, false);
DataTools.unpackBytes(height, b, 8, 4, false);
b[12] = (byte) (bytesPerPixel * 8);
if (indexed) b[13] = (byte) 3;
else if (nChannels == 1) b[13] = (byte) 0;
else if (nChannels == 2) b[13] = (byte) 4;
else if (nChannels == 3) b[13] = (byte) 2;
else if (nChannels == 4) b[13] = (byte) 6;
b[14] = (byte) 0;
b[15] = (byte) 0;
b[16] = (byte) 0;
out.write(b);
out.writeInt(crc(b));
// write acTL chunk
out.writeInt(8);
out.writeBytes("acTL");
numFramesPointer = out.getFilePointer();
out.writeInt(0);
out.writeInt(0);
out.writeInt(0); // save a place for the CRC
}
}