Exemple #1
0
  /**
   * Save network weights to a file
   *
   * @param file_name Output file name
   * @param header header of the data set for which the network has been adjusted to
   */
  protected void printNetworkToFile(String file_name, String header) {
    // write the header to the file
    Files.writeFile(file_name, header);

    Files.addToFile(file_name, "Number of neurons: " + nSel + "\n");
    for (int i = 0; i < nSel; i++) {
      Files.addToFile(file_name, "\nNeuron " + i + "\n");
      for (int j = 0; j < conjS[i].length; j++) {
        Files.addToFile(file_name, Double.toString(conjS[i][j]) + " ");
      }
      Files.addToFile(file_name, " Class = " + clasesS[i] + "\n");
    }
  }
Exemple #2
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    /**
     * Constructor of the Class Parametros
     *
     * @param nombreFileParametros is the pathname of input parameter file
     */
    Parametros(String nombreFileParametros) {

      try {
        int i;
        String fichero, linea, tok;
        StringTokenizer lineasFile, tokens;

        /* read the parameter file using Files class */
        fichero = Files.readFile(nombreFileParametros);
        fichero += "\n";

        /* remove all \r characters. it is neccesary for a correst use in Windows and UNIX  */
        fichero = fichero.replace('\r', ' ');

        /* extracts the differents tokens of the file */
        lineasFile = new StringTokenizer(fichero, "\n");

        i = 0;
        while (lineasFile.hasMoreTokens()) {

          linea = lineasFile.nextToken();
          i++;
          tokens = new StringTokenizer(linea, " ,\t");
          if (tokens.hasMoreTokens()) {

            tok = tokens.nextToken();
            if (tok.equalsIgnoreCase("algorithm")) nameAlgorithm = getParamString(tokens);
            else if (tok.equalsIgnoreCase("inputdata")) getInputFiles(tokens);
            else if (tok.equalsIgnoreCase("outputdata")) getOutputFiles(tokens);
            else if (tok.equalsIgnoreCase("seed")) seed = getParamLong(tokens);
            else throw new java.io.IOException("Syntax error on line " + i + ": [" + tok + "]\n");
          }
        }

      } catch (java.io.FileNotFoundException e) {
        System.err.println(e + "Parameter file");
      } catch (java.io.IOException e) {
        System.err.println(e + "Aborting program");
        System.exit(-1);
      }

      /** show the read parameter in the standard output */
      String contents = "-- Parameters echo --- \n";
      contents += "Algorithm name: " + nameAlgorithm + "\n";
      contents += "Input Train File: " + trainFileNameInput + "\n";
      contents += "Input Test File: " + testFileNameInput + "\n";
      contents += "Output Train File: " + trainFileNameOutput + "\n";
      contents += "Output Test File: " + testFileNameOutput + "\n";
      System.out.println(contents);
    }
Exemple #3
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  /** Method interface for Automatic Branch and Bound */
  public void ejecutar() {
    String resultado;
    int i, numFeatures;
    Date d;

    d = new Date();
    resultado =
        "RESULTS generated at "
            + String.valueOf((Date) d)
            + " \n--------------------------------------------------\n";
    resultado += "Algorithm Name: " + params.nameAlgorithm + "\n";

    /* call of ABB algorithm */
    runABB();

    resultado += "\nPARTITION Filename: " + params.trainFileNameInput + "\n---------------\n\n";
    resultado += "Features selected: \n";

    for (i = numFeatures = 0; i < features.length; i++)
      if (features[i] == true) {
        resultado += Attributes.getInputAttribute(i).getName() + " - ";
        numFeatures++;
      }

    resultado +=
        "\n\n"
            + String.valueOf(numFeatures)
            + " features of "
            + Attributes.getInputNumAttributes()
            + "\n\n";

    resultado +=
        "Error in test (using train for prediction): "
            + String.valueOf(data.validacionCruzada(features))
            + "\n";
    resultado +=
        "Error in test (using test for prediction): "
            + String.valueOf(data.LVOTest(features))
            + "\n";

    resultado += "---------------\n";

    System.out.println("Experiment completed successfully");

    /* creates the new training and test datasets only with the selected features */
    Files.writeFile(params.extraFileNameOutput, resultado);
    data.generarFicherosSalida(params.trainFileNameOutput, params.testFileNameOutput, features);
  }
Exemple #4
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  /**
   * Defined to manage de semantics of the linguistic variables Generates the semantics of the
   * linguistic variables using a partition consisting of triangle simetrics fuzzy sets. The cut
   * points al stored at 0.5 level of the fuzzy sets to be considered in the computation of the gain
   * of information. Also writes the semantics of the linguistic variables in the specified file
   *
   * @param nFile Name of file to write the semantics
   */
  public void InitSemantics(String nFile) {
    int v, etq;
    float marca, valor, p_corte;
    float auxX0, auxX1, auxX3, auxY;
    String contents;

    contents = "\n--------------------------------------------\n";
    contents += "|  Semantics for the continuous variables  |\n";
    contents += "--------------------------------------------\n";

    for (v = 0; v < num_vars; v++) {
      if (var[v].getContinuous() == true) {
        marca = (var[v].getMax() - var[v].getMin()) / ((float) (var[v].getNLabels() - 1));
        p_corte = var[v].getMin() + marca / 2;
        contents += "Fuzzy sets parameters for variable " + var[v].getName() + ":\n";
        for (etq = 0; etq < var[v].getNLabels(); etq++) {
          valor = var[v].getMin() + marca * (etq - 1);
          auxX0 = Round(valor, var[v].getMax());
          valor = var[v].getMin() + marca * etq;
          auxX1 = Round(valor, var[v].getMax());
          valor = var[v].getMin() + marca * (etq + 1);
          auxX3 = Round(valor, var[v].getMax());
          auxY = 1;
          BaseDatos[v][etq].setVal(auxX0, auxX1, auxX3, auxY);
          p_corte += marca;
          contents +=
              "\tLabel "
                  + etq
                  + ": "
                  + BaseDatos[v][etq].getX0()
                  + " "
                  + BaseDatos[v][etq].getX1()
                  + " "
                  + BaseDatos[v][etq].getX3()
                  + "\n";
        }
      }
    }
    contents += "\n";
    if (nFile != "") Files.addToFile(nFile, contents);
  }
Exemple #5
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  /**
   * Computes and stores the information gain of each attribute (variable) of the dataset
   *
   * @param Examples Set of instances of the dataset
   * @param nFile Name of the file
   */
  public void GainInit(TableDat Examples, String nFile) {

    int i, j, h, v;
    boolean encontrado;
    float info_gk, suma, suma1, suma2, p_clase, logaritmo;
    int num_clase[] = new int[n_clases];
    int n_vars = this.getNVars();
    int MaxVal = this.getMaxVal();
    float p[][] = new float[n_vars][MaxVal];
    float p_cond[][][] = new float[n_clases][n_vars][MaxVal];
    GI = new float[n_vars];
    intervalosGI = new float[n_vars][MaxVal];

    String contents;
    contents = "\n--------------------------------------------\n";
    contents += "|       Computation of the info gain       |\n";
    contents += "--------------------------------------------\n";
    contents += "Points for computation of the info gain:\n";

    // Loads the values for "intervalosGI"
    float marca, p_corte;
    for (int v1 = 0; v1 < n_vars; v1++) {
      if (this.getContinuous(v1) == true) {
        contents += "\tVariable " + var[v1].getName() + ": ";
        marca = (this.getMax(v1) - this.getMin(v1)) / ((float) (this.getNLabelVar(v1) - 1));
        p_corte = this.getMin(v1) + marca / 2;
        for (int et = 0; et < this.getNLabelVar(v1); et++) {
          intervalosGI[v1][et] = p_corte;
          contents += intervalosGI[v1][et] + "  ";
          p_corte += marca;
        }
        contents += "\n";
      }
    }

    // Structure initialization
    for (i = 0; i < n_clases; i++) num_clase[i] = 0;
    for (i = 0; i < n_vars; i++)
      for (j = 0; j < MaxVal; j++) {
        p[i][j] = 0; // Simple probabilities matrix
        for (h = 0; h < n_clases; h++) p_cond[h][i][j] = 0; // Conditional probabilities matrix
      }

    // Computation of the Simple and Conditional probabilities matrixs
    for (i = 0; i < Examples.getNEx(); i++) {
      num_clase[Examples.getClass(i)]++; // distribution by classes
      for (j = 0; j < n_vars; j++) { // distribution by values
        if (!this.getContinuous(j)) { // Discrete variable
          if (!Examples.getLost(this, i, j)) {
            // if the value is not a lost one
            p[j][(int) Examples.getDat(i, j)]++;
            p_cond[(int) Examples.getClass(i)][j][(int) Examples.getDat(i, j)]++;
          }
        } else { // Continuous variable
          encontrado = false;
          h = 0;
          while (!encontrado && h < this.getNLabelVar(j)) {
            if (Examples.getDat(i, j) <= intervalosGI[j][h]) encontrado = true;
            else h++;
          }
          if (encontrado == true) {
            p[j][h]++;
            p_cond[(int) Examples.getClass(i)][j][h]++;
          } else {
            if (!Examples.getLost(this, i, j)) {
              // Lost value
              System.out.println(
                  "Fallo al calcular la ganancia de infor, Variable " + j + " Ejemplo " + i);
              return;
            }
          }
        }
      }
    }
    for (h = 0; h < n_clases; h++)
      for (i = 0; i < n_vars; i++) {
        if (!this.getContinuous(i)) // Discrete variable
        for (j = (int) this.getMin(i); j <= (int) this.getMax(i); j++)
            p_cond[h][i][j] = p_cond[h][i][j] / Examples.getNEx();
        else // Continuous variable
        for (j = 0; j < this.getNLabelVar(i); j++)
            p_cond[h][i][j] = p_cond[h][i][j] / Examples.getNEx();
      }
    for (i = 0; i < n_vars; i++) {
      if (!this.getContinuous(i)) // Discrete variable
      for (j = (int) this.getMin(i); j <= (int) this.getMax(i); j++)
          p[i][j] = p[i][j] / Examples.getNEx();
      else // Continuous variable
      for (j = 0; j < this.getNLabelVar(i); j++) p[i][j] = p[i][j] / Examples.getNEx();
    }

    // Info Gk computation
    suma = 0;
    for (i = 0; i < n_clases; i++) {
      p_clase = ((float) num_clase[i]) / Examples.getNEx();
      if (p_clase > 0) {
        logaritmo = (float) (Math.log((double) p_clase) / Math.log(2));
        suma += p_clase * logaritmo;
      }
    }
    info_gk = (-1) * suma;

    // Information gain computation for each attibute
    for (v = 0; v < n_vars; v++) {
      suma = info_gk;
      suma1 = 0;
      if (!this.getContinuous(v)) { // Discrete Variable
        for (i = (int) this.getMin(v); i <= (int) this.getMax(v); i++) {
          suma2 = 0;
          for (j = 0; j < n_clases; j++)
            if (p_cond[j][v][i] > 0) {
              logaritmo = (float) (Math.log(p_cond[j][v][i]) / Math.log(2));
              suma2 += p_cond[j][v][i] * logaritmo;
            }
          suma1 += p[v][i] * (-1) * suma2;
        }
      } else { // Continuous Variable
        for (i = 0; i < this.getNLabelVar(v); i++) {
          suma2 = 0;
          for (j = 0; j < n_clases; j++)
            if (p_cond[j][v][i] > 0) {
              logaritmo = (float) (Math.log(p_cond[j][v][i]) / Math.log(2));
              suma2 += p_cond[j][v][i] * logaritmo;
            }
          suma1 += p[v][i] * (-1) * suma2;
        }
      }
      GI[v] = suma + (-1) * suma1;
    }

    contents += "Information Gain of the variables:\n";
    for (v = 0; v < n_vars; v++) {
      if (this.getContinuous(v) == true)
        contents += "\tVariable " + var[v].getName() + ": " + GI[v] + "\n";
    }

    if (nFile != "") Files.addToFile(nFile, contents);
  }