private void initializeRead(int imageIndex, J2KImageReadParamJava param, J2KMetadata metadata) {
try {
iis.mark();
in = new IISRandomAccessIO(iis);
// **** File Format ****
// If the codestream is wrapped in the jp2 fileformat, Read the
// file format wrapper
ff = new FileFormatReader(in, metadata);
ff.readFileFormat();
in.seek(ff.getFirstCodeStreamPos());
hi = new HeaderInfo();
try {
hd = new HeaderDecoder(in, j2krparam, hi);
} catch (EOFException e) {
throw new RuntimeException(I18N.getString("J2KReadState2"));
} catch (IOException ioe) {
throw new RuntimeException(ioe);
}
this.width = hd.getImgWidth();
this.height = hd.getImgHeight();
Rectangle sourceRegion = param.getSourceRegion();
sourceOrigin = new Point();
sourceRegion = new Rectangle(hd.getImgULX(), hd.getImgULY(), this.width, this.height);
// if the subsample rate for components are not consistent
boolean compConsistent = true;
stepX = hd.getCompSubsX(0);
stepY = hd.getCompSubsY(0);
for (int i = 1; i < nComp; i++) {
if (stepX != hd.getCompSubsX(i) || stepY != hd.getCompSubsY(i))
throw new RuntimeException(I18N.getString("J2KReadState12"));
}
// Get minimum number of resolution levels available across
// all tile-components.
int minResLevels = hd.getDecoderSpecs().dls.getMin();
// Set current resolution level.
this.resolution = param != null ? param.getResolution() : minResLevels;
if (resolution < 0 || resolution > minResLevels) {
resolution = minResLevels;
}
// Convert source region to lower resolution level.
if (resolution != minResLevels || stepX != 1 || stepY != 1) {
sourceRegion =
J2KImageReader.getReducedRect(sourceRegion, minResLevels, resolution, stepX, stepY);
}
destinationRegion = (Rectangle) sourceRegion.clone();
J2KImageReader.computeRegionsWrapper(
param,
false,
this.width,
this.height,
param.getDestination(),
sourceRegion,
destinationRegion);
sourceOrigin = new Point(sourceRegion.x, sourceRegion.y);
scaleX = param.getSourceXSubsampling();
scaleY = param.getSourceYSubsampling();
xOffset = param.getSubsamplingXOffset();
yOffset = param.getSubsamplingYOffset();
this.width = destinationRegion.width;
this.height = destinationRegion.height;
Point tileOffset = hd.getTilingOrigin(null);
this.tileWidth = hd.getNomTileWidth();
this.tileHeight = hd.getNomTileHeight();
// Convert tile 0 to lower resolution level.
if (resolution != minResLevels || stepX != 1 || stepY != 1) {
Rectangle tileRect = new Rectangle(tileOffset);
tileRect.width = tileWidth;
tileRect.height = tileHeight;
tileRect = J2KImageReader.getReducedRect(tileRect, minResLevels, resolution, stepX, stepY);
tileOffset = tileRect.getLocation();
tileWidth = tileRect.width;
tileHeight = tileRect.height;
}
tileXOffset = tileOffset.x;
tileYOffset = tileOffset.y;
// Set the tile step sizes. These values are used because it
// is possible that tiles will be empty. In particular at lower
// resolution levels when subsampling is used this may be the
// case. This method of calculation will work at least for
// Profile-0 images.
if (tileWidth * (1 << (minResLevels - resolution)) * stepX > hd.getNomTileWidth()) {
tileStepX =
(tileWidth * (1 << (minResLevels - resolution)) * stepX + hd.getNomTileWidth() - 1)
/ hd.getNomTileWidth();
} else {
tileStepX = 1;
}
if (tileHeight * (1 << (minResLevels - resolution)) * stepY > hd.getNomTileHeight()) {
tileStepY =
(tileHeight * (1 << (minResLevels - resolution)) * stepY + hd.getNomTileHeight() - 1)
/ hd.getNomTileHeight();
} else {
tileStepY = 1;
}
if (!destinationRegion.equals(sourceRegion)) noTransform = false;
// **** Header decoder ****
// Instantiate header decoder and read main header
decSpec = hd.getDecoderSpecs();
// **** Instantiate decoding chain ****
// Get demixed bitdepths
nComp = hd.getNumComps();
int[] depth = new int[nComp];
for (int i = 0; i < nComp; i++) depth[i] = hd.getOriginalBitDepth(i);
// Get channel mapping
ChannelDefinitionBox cdb = null;
if (metadata != null)
cdb = (ChannelDefinitionBox) metadata.getElement("JPEG2000ChannelDefinitionBox");
channelMap = new int[nComp];
if (cdb != null && metadata.getElement("JPEG2000PaletteBox") == null) {
short[] assoc = cdb.getAssociation();
short[] types = cdb.getTypes();
short[] channels = cdb.getChannel();
for (int i = 0; i < types.length; i++)
if (types[i] == 0) channelMap[channels[i]] = assoc[i] - 1;
else if (types[i] == 1 || types[i] == 2) channelMap[channels[i]] = channels[i];
} else {
for (int i = 0; i < nComp; i++) channelMap[i] = i;
}
// **** Bitstream reader ****
try {
boolean logJJ2000Messages = Boolean.getBoolean("jj2000.j2k.decoder.log");
breader =
BitstreamReaderAgent.createInstance(in, hd, j2krparam, decSpec, logJJ2000Messages, hi);
} catch (IOException e) {
throw new RuntimeException(
I18N.getString("J2KReadState3")
+ " "
+ ((e.getMessage() != null) ? (":\n" + e.getMessage()) : ""));
} catch (IllegalArgumentException e) {
throw new RuntimeException(
I18N.getString("J2KReadState4")
+ " "
+ ((e.getMessage() != null) ? (":\n" + e.getMessage()) : ""));
}
// **** Entropy decoder ****
try {
entdec = hd.createEntropyDecoder(breader, j2krparam);
} catch (IllegalArgumentException e) {
throw new RuntimeException(
I18N.getString("J2KReadState5")
+ " "
+ ((e.getMessage() != null) ? (":\n" + e.getMessage()) : ""));
}
// **** ROI de-scaler ****
try {
roids = hd.createROIDeScaler(entdec, j2krparam, decSpec);
} catch (IllegalArgumentException e) {
throw new RuntimeException(
I18N.getString("J2KReadState6")
+ " "
+ ((e.getMessage() != null) ? (":\n" + e.getMessage()) : ""));
}
// **** Dequantizer ****
try {
deq = hd.createDequantizer(roids, depth, decSpec);
} catch (IllegalArgumentException e) {
throw new RuntimeException(
I18N.getString("J2KReadState7")
+ " "
+ ((e.getMessage() != null) ? (":\n" + e.getMessage()) : ""));
}
// **** Inverse wavelet transform ***
try {
// full page inverse wavelet transform
invWT = InverseWT.createInstance(deq, decSpec);
} catch (IllegalArgumentException e) {
throw new RuntimeException(
I18N.getString("J2KReadState8")
+ " "
+ ((e.getMessage() != null) ? (":\n" + e.getMessage()) : ""));
}
int res = breader.getImgRes();
int mrl = decSpec.dls.getMin();
invWT.setImgResLevel(res);
// **** Data converter **** (after inverse transform module)
converter = new ImgDataConverter(invWT, 0);
// **** Inverse component transformation ****
ictransf = new InvCompTransf(converter, decSpec, depth);
// If the destination band is set used it
sourceBands = j2krparam.getSourceBands();
if (sourceBands == null) {
sourceBands = new int[nComp];
for (int i = 0; i < nComp; i++) sourceBands[i] = i;
}
nComp = sourceBands.length;
destinationBands = j2krparam.getDestinationBands();
if (destinationBands == null) {
destinationBands = new int[nComp];
for (int i = 0; i < nComp; i++) destinationBands[i] = i;
}
J2KImageReader.checkReadParamBandSettingsWrapper(
param, hd.getNumComps(), destinationBands.length);
levelShift = new int[nComp];
minValues = new int[nComp];
maxValues = new int[nComp];
fracBits = new int[nComp];
dataBlocks = new DataBlkInt[nComp];
depth = new int[nComp];
bandOffsets = new int[nComp];
maxDepth = 0;
isSigned = false;
for (int i = 0; i < nComp; i++) {
depth[i] = hd.getOriginalBitDepth(sourceBands[i]);
if (depth[i] > maxDepth) maxDepth = depth[i];
dataBlocks[i] = new DataBlkInt();
// XXX: may need to change if ChannelDefinition is used to
// define the color channels, such as BGR order
bandOffsets[i] = i;
if (hd.isOriginalSigned(sourceBands[i])) isSigned = true;
else {
levelShift[i] = 1 << (ictransf.getNomRangeBits(sourceBands[i]) - 1);
}
// Get the number of bits in the image, and decide what the max
// value should be, depending on whether it is signed or not
int nomRangeBits = ictransf.getNomRangeBits(sourceBands[i]);
maxValues[i] = (1 << (isSigned == true ? (nomRangeBits - 1) : nomRangeBits)) - 1;
minValues[i] = isSigned ? -(maxValues[i] + 1) : 0;
fracBits[i] = ictransf.getFixedPoint(sourceBands[i]);
}
iis.reset();
} catch (IllegalArgumentException e) {
throw new RuntimeException(e.getMessage(), e);
} catch (Error e) {
if (e.getMessage() != null) throw new RuntimeException(e.getMessage(), e);
else {
throw new RuntimeException(I18N.getString("J2KReadState9"), e);
}
} catch (RuntimeException e) {
if (e.getMessage() != null)
throw new RuntimeException(I18N.getString("J2KReadState10") + " " + e.getMessage(), e);
else {
throw new RuntimeException(I18N.getString("J2KReadState10"), e);
}
} catch (Throwable e) {
throw new RuntimeException(I18N.getString("J2KReadState10"), e);
}
}
private Raster readSubsampledRaster(WritableRaster raster) throws IOException {
if (raster == null)
raster =
Raster.createWritableRaster(
sampleModel.createCompatibleSampleModel(
destinationRegion.x + destinationRegion.width,
destinationRegion.y + destinationRegion.height),
new Point(destinationRegion.x, destinationRegion.y));
int pixbuf[] = null; // line buffer for pixel data
boolean prog = false; // Flag for progressive data
Point nT = ictransf.getNumTiles(null);
int numBands = sourceBands.length;
Rectangle destRect = raster.getBounds().intersection(destinationRegion);
int offx = destinationRegion.x;
int offy = destinationRegion.y;
int sourceSX = (destRect.x - offx) * scaleX + sourceOrigin.x;
int sourceSY = (destRect.y - offy) * scaleY + sourceOrigin.y;
int sourceEX = (destRect.width - 1) * scaleX + sourceSX;
int sourceEY = (destRect.height - 1) * scaleY + sourceSY;
int startXTile = (sourceSX - tileXOffset) / tileWidth;
int startYTile = (sourceSY - tileYOffset) / tileHeight;
int endXTile = (sourceEX - tileXOffset) / tileWidth;
int endYTile = (sourceEY - tileYOffset) / tileHeight;
startXTile = clip(startXTile, 0, nT.x - 1);
startYTile = clip(startYTile, 0, nT.y - 1);
endXTile = clip(endXTile, 0, nT.x - 1);
endYTile = clip(endYTile, 0, nT.y - 1);
int totalXTiles = endXTile - startXTile + 1;
int totalYTiles = endYTile - startYTile + 1;
int totalTiles = totalXTiles * totalYTiles;
// Start the data delivery to the cached consumers tile by tile
for (int y = startYTile; y <= endYTile; y++) {
if (reader.getAbortRequest()) break;
// Loop on horizontal tiles
for (int x = startXTile; x <= endXTile; x++) {
if (reader.getAbortRequest()) break;
float initialFraction = (x - startXTile + (y - startYTile) * totalXTiles) / totalTiles;
ictransf.setTile(x * tileStepX, y * tileStepY);
int sx = hd.getCompSubsX(0);
int cTileWidth = (ictransf.getTileWidth() + sx - 1) / sx;
int sy = hd.getCompSubsY(0);
int cTileHeight = (ictransf.getTileHeight() + sy - 1) / sy;
// Offsets within the tile.
int tx = 0;
int ty = 0;
// The region for this tile
int startX = tileXOffset + x * tileWidth;
int startY = tileYOffset + y * tileHeight;
// sourceSX is guaranteed to be >= startX
if (sourceSX > startX) {
if (startX >= hd.getImgULX()) {
tx = sourceSX - startX; // Intra-tile offset.
cTileWidth -= tx; // Reduce effective width.
}
startX = sourceSX; // Absolute position.
}
// sourceSY is guaranteed to be >= startY
if (sourceSY > startY) {
if (startY >= hd.getImgULY()) {
ty = sourceSY - startY; // Intra-tile offset.
cTileHeight -= ty; // Reduce effective width.
}
startY = sourceSY; // Absolute position.
}
// Decrement dimensions if end position is within tile.
if (sourceEX < startX + cTileWidth - 1) {
cTileWidth += sourceEX - startX - cTileWidth + 1;
}
if (sourceEY < startY + cTileHeight - 1) {
cTileHeight += sourceEY - startY - cTileHeight + 1;
}
// The start X in the destination
int x1 = (startX + scaleX - 1 - sourceOrigin.x) / scaleX;
int x2 = (startX + scaleX - 1 + cTileWidth - sourceOrigin.x) / scaleX;
int lineLength = x2 - x1;
if (pixbuf == null || pixbuf.length < lineLength)
pixbuf = new int[lineLength]; // line buffer for pixel data
x2 = (x2 - 1) * scaleX + sourceOrigin.x - startX;
int y1 = (startY + scaleY - 1 - sourceOrigin.y) / scaleY;
x1 += offx;
y1 += offy;
// check to see if we have YCbCr data
boolean ycbcr = false;
for (int i = 0; i < numBands; i++) {
DataBlkInt db = dataBlocks[i];
db.ulx = tx;
db.uly = ty + cTileHeight - 1;
db.w = cTileWidth;
db.h = 1;
try {
ictransf.getInternCompData(db, channelMap[sourceBands[i]]);
} catch (ArrayIndexOutOfBoundsException e) {
ycbcr = true;
break;
}
}
// Deliver in lines to reduce memory usage
for (int l = ty, m = y1; l < ty + cTileHeight; l += scaleY, m++) {
if (reader.getAbortRequest()) break;
if (ycbcr) {
DataBlkInt lum = dataBlocks[0];
DataBlkInt cb = dataBlocks[1];
DataBlkInt cr = dataBlocks[2];
lum.ulx = tx;
lum.uly = l;
lum.w = cTileWidth;
lum.h = 1;
ictransf.getInternCompData(lum, channelMap[sourceBands[0]]);
prog = prog || lum.progressive;
cb.ulx = tx;
cb.uly = l;
cb.w = cTileWidth / 2;
cb.h = 1;
ictransf.getInternCompData(cb, channelMap[sourceBands[1]]);
prog = prog || cb.progressive;
cr.ulx = tx;
cr.uly = l;
cr.w = cTileWidth / 2;
cr.h = 1;
ictransf.getInternCompData(cr, channelMap[sourceBands[2]]);
prog = prog || cr.progressive;
int[] lumdata = lum.data;
int[] cbdata = cb.data;
int[] crdata = cr.data;
int k1 = lum.offset + x2;
int fracBit = fracBits[0];
int lS = levelShift[0];
int min = minValues[0];
int max = maxValues[0];
int[][] pix = new int[3][lineLength];
for (int j = lineLength - 1; j >= 0; j--, k1 -= scaleX) {
int red = (lumdata[k1] >> fracBit) + lS;
red = (red < min) ? min : ((red > max) ? max : red);
int cIndex = k1 / 2;
int chrom1 = cbdata[cIndex];
int chrom2 = crdata[cIndex];
int lumval = red;
red = (int) (chrom2 * 1.542 + lumval);
int blue = (int) (lumval + 1.772 * chrom1 - 0.886);
int green = (int) (lumval - 0.34413 * chrom1 - 0.71414 * chrom2 - 0.1228785);
if (red > 255) red = 255;
if (green > 255) green = 255;
if (blue > 255) blue = 255;
if (red < 0) red = 0;
if (green < 0) green = 0;
if (blue < 0) blue = 0;
pix[0][j] = red;
pix[1][j] = green;
pix[2][j] = blue;
}
raster.setSamples(x1, m, lineLength, 1, destinationBands[0], pix[0]);
raster.setSamples(x1, m, lineLength, 1, destinationBands[1], pix[1]);
raster.setSamples(x1, m, lineLength, 1, destinationBands[2], pix[2]);
continue;
}
// Request line data
for (int i = 0; i < numBands; i++) {
DataBlkInt db = dataBlocks[i];
db.ulx = tx;
db.uly = l;
db.w = ycbcr && i > 0 ? cTileWidth / 2 : cTileWidth;
db.h = 1;
ictransf.getInternCompData(db, channelMap[sourceBands[i]]);
prog = prog || db.progressive;
int[] data = db.data;
int k1 = db.offset + x2;
int fracBit = fracBits[i];
int lS = levelShift[i];
int min = minValues[i];
int max = maxValues[i];
if (ImageUtil.isBinary(sampleModel)) {
// Force min max to 0 and 1.
min = 0;
max = 1;
if (bytebuf == null || bytebuf.length < cTileWidth * numBands)
bytebuf = new byte[cTileWidth * numBands];
for (int j = lineLength - 1; j >= 0; j--, k1 -= scaleX) {
int tmp = (data[k1] >> fracBit) + lS;
bytebuf[j] = (byte) ((tmp < min) ? min : ((tmp > max) ? max : tmp));
}
ImageUtil.setUnpackedBinaryData(bytebuf, raster, new Rectangle(x1, m, lineLength, 1));
} else {
for (int j = lineLength - 1; j >= 0; j--, k1 -= scaleX) {
int tmp = (data[k1] >> fracBit) + lS;
pixbuf[j] = (tmp < min) ? min : ((tmp > max) ? max : tmp);
}
// Send the line data to the BufferedImage
raster.setSamples(x1, m, lineLength, 1, destinationBands[i], pixbuf);
}
}
if (destImage != null)
reader.processImageUpdateWrapper(
destImage, x1, m, cTileWidth, 1, 1, 1, destinationBands);
float fraction = initialFraction + (l - ty + 1.0F) / cTileHeight / totalTiles;
reader.processImageProgressWrapper(100.0f * fraction);
}
} // End loop on horizontal tiles
} // End loop on vertical tiles
return raster;
}
public Raster getTile(int tileX, int tileY, WritableRaster raster) throws IOException {
Point nT = ictransf.getNumTiles(null);
if (noTransform) {
if (tileX >= nT.x || tileY >= nT.y)
throw new IllegalArgumentException(I18N.getString("J2KImageReader0"));
ictransf.setTile(tileX * tileStepX, tileY * tileStepY);
// The offset of the active tiles is the same for all components,
// since we don't support different component dimensions.
int tOffx;
int tOffy;
int cTileWidth;
int cTileHeight;
if (raster != null && (this.resolution < hd.getDecoderSpecs().dls.getMin())
|| stepX != 1
|| stepY != 1) {
tOffx = raster.getMinX();
tOffy = raster.getMinY();
cTileWidth = Math.min(raster.getWidth(), ictransf.getTileWidth());
cTileHeight = Math.min(raster.getHeight(), ictransf.getTileHeight());
} else {
tOffx =
ictransf.getCompULX(0)
- (ictransf.getImgULX() + ictransf.getCompSubsX(0) - 1) / ictransf.getCompSubsX(0)
+ destinationRegion.x;
tOffy =
ictransf.getCompULY(0)
- (ictransf.getImgULY() + ictransf.getCompSubsY(0) - 1) / ictransf.getCompSubsY(0)
+ destinationRegion.y;
cTileWidth = ictransf.getTileWidth();
cTileHeight = ictransf.getTileHeight();
}
if (raster == null)
raster = Raster.createWritableRaster(sampleModel, new Point(tOffx, tOffy));
int numBands = sampleModel.getNumBands();
if (tOffx + cTileWidth >= destinationRegion.width + destinationRegion.x)
cTileWidth = destinationRegion.width + destinationRegion.x - tOffx;
if (tOffy + cTileHeight >= destinationRegion.height + destinationRegion.y)
cTileHeight = destinationRegion.height + destinationRegion.y - tOffy;
// create the line buffer for pixel data if it is not large enough
// or null
if (pixbuf == null || pixbuf.length < cTileWidth * numBands)
pixbuf = new int[cTileWidth * numBands];
boolean prog = false;
// Deliver in lines to reduce memory usage
for (int l = 0; l < cTileHeight; l++) {
if (reader.getAbortRequest()) break;
// Request line data
for (int i = 0; i < numBands; i++) {
if (reader.getAbortRequest()) break;
DataBlkInt db = dataBlocks[i];
db.ulx = 0;
db.uly = l;
db.w = cTileWidth;
db.h = 1;
ictransf.getInternCompData(db, channelMap[sourceBands[i]]);
prog = prog || db.progressive;
int[] data = db.data;
int k1 = db.offset + cTileWidth - 1;
int fracBit = fracBits[i];
int lS = levelShift[i];
int min = minValues[i];
int max = maxValues[i];
if (ImageUtil.isBinary(sampleModel)) {
// Force min max to 0 and 1.
min = 0;
max = 1;
if (bytebuf == null || bytebuf.length < cTileWidth * numBands)
bytebuf = new byte[cTileWidth * numBands];
for (int j = cTileWidth - 1; j >= 0; j--) {
int tmp = (data[k1--] >> fracBit) + lS;
bytebuf[j] = (byte) ((tmp < min) ? min : ((tmp > max) ? max : tmp));
}
ImageUtil.setUnpackedBinaryData(
bytebuf, raster, new Rectangle(tOffx, tOffy + l, cTileWidth, 1));
} else {
for (int j = cTileWidth - 1; j >= 0; j--) {
int tmp = (data[k1--] >> fracBit) + lS;
pixbuf[j] = (tmp < min) ? min : ((tmp > max) ? max : tmp);
}
raster.setSamples(tOffx, tOffy + l, cTileWidth, 1, destinationBands[i], pixbuf);
}
}
}
} else {
readSubsampledRaster(raster);
}
return raster;
}