public void downloadBAMTool(String toolName, HttpServletResponse response)
throws BAMToolboxDepolyerServiceBAMToolboxDeploymentExceptionException {
try {
ServletOutputStream out = response.getOutputStream();
DataHandler downloadData = stub.downloadToolBox(toolName);
if (downloadData != null) {
String fileName = "";
if (!toolName.endsWith(".tbox")) {
fileName = toolName + ".tbox";
} else fileName = toolName;
response.setHeader("Content-Disposition", "fileName=" + fileName);
response.setContentType(downloadData.getContentType());
InputStream in = downloadData.getDataSource().getInputStream();
int nextChar;
while ((nextChar = in.read()) != -1) {
out.write((char) nextChar);
}
out.flush();
in.close();
} else {
out.write("The requested service archive was not found on the server".getBytes());
}
} catch (RemoteException e) {
log.error(e.getMessage(), e);
throw new BAMToolboxDepolyerServiceBAMToolboxDeploymentExceptionException(e);
} catch (IOException e) {
log.error(e.getMessage(), e);
throw new BAMToolboxDepolyerServiceBAMToolboxDeploymentExceptionException(e);
}
}
/**
* Parses the MimePart to create a DataSource.
*
* @param parent the parent multi-part
* @param part the current part to be processed
* @return the DataSource
* @throws MessagingException creating the DataSource failed
* @throws IOException creating the DataSource failed
*/
protected DataSource createDataSource(final Multipart parent, final MimePart part)
throws MessagingException, IOException {
final DataHandler dataHandler = part.getDataHandler();
final DataSource dataSource = dataHandler.getDataSource();
final String contentType = getBaseMimeType(dataSource.getContentType());
final byte[] content = this.getContent(dataSource.getInputStream());
final ByteArrayDataSource result = new ByteArrayDataSource(content, contentType);
final String dataSourceName = getDataSourceName(part, dataSource);
result.setName(dataSourceName);
return result;
}
public java.io.InputStream getInputStream() throws OMException {
if (isBinary) {
if (dataHandlerObject == null) {
getDataHandler();
}
InputStream inStream;
javax.activation.DataHandler dataHandler = (javax.activation.DataHandler) dataHandlerObject;
try {
inStream = dataHandler.getDataSource().getInputStream();
} catch (IOException e) {
throw new OMException("Cannot get InputStream from DataHandler.", e);
}
return inStream;
} else {
throw new OMException("Unsupported Operation");
}
}
public DataSourceSource(DataHandler dh) throws MimeTypeParseException {
this(dh.getDataSource());
}
